RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SLC5A3P53794 718 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RPL23AP62750 156 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 RAB1AP62820 205 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SLC17A1Q14916 467 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ARL6IP1Q15041 203 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 STK11Q15831 433 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 CDO1Q16878 200 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ESCO2Q56NI9 601 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 EMC10Q5UCC4 262 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ANXA8L1Q5VT79 327 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 IQSEC1Q6DN90 963 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 LRRN1Q6UXK5 716 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 SSX7Q7RTT5 188 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF227Q86WZ6 799 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.56□□□□□ -1.84
USP53-205ENST00000509769 DCP1BQ8IZD4 617 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 FBXO39Q8N4B4 442 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 TMEM199Q8N511 208 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF615Q8N8J6 731 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 POMGNT2Q8NAT1 580 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 BHLHE22Q8NFJ8 381 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 OR56A4Q8NGH8 313 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 HTRA1Q92743 480 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NUDT16Q96DE0 195 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 NXPE2Q96DL1 559 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 C11orf24Q96F05 449 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 SCRN2Q96FV2 425 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DNAJC1Q96KC8 554 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 CCDC17Q96LX7 622 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 NECAB3Q96P71 396 aaPredicted RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 DHRS9Q9BPW9 319 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 DGCR6LQ9BY27 220 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ZNF696Q9H7X3 374 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 MRM3Q9HC36 420 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 ZFYVE28Q9HCC9 887 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 KCNQ5Q9NR82 932 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RBM12Q9NTZ6 932 aaKnown RBP3.56□□□□□ -1.84
USP53-205ENST00000509769 NDRG3Q9UGV2 375 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 KIAA1257Q9ULG3 409 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 PCDHB5Q9Y5E4 795 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 LYVE1Q9Y5Y7 322 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 ARL5AQ9Y689 179 aa3.56□□□□□ -1.84
USP53-205ENST00000509769 RPTORQ8N122 1335 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HMX3A6NHT5 357 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PHYHO14832 338 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LRRTM2O43300 516 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LGR5O75473 907 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RFPL1O75677 317 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OAZ2O95190 189 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC2A2P11168 524 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 COL6A2P12110 1019 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RNH1P13489 461 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 HPGDP15428 266 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GCSHP23434 173 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GKP32189 559 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GRK5P34947 590 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HTR2BP41595 481 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MC3RP41968 323 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC26A2P50443 739 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RPL14P50914 215 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC12A3P55017 1021 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PTH1RQ03431 593 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CYP24A1Q07973 514 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 AIMP2Q13155 320 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 PTGDRQ13258 359 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TCIRG1Q13488 830 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MEA1Q16626 185 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UPP1Q16831 310 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PROSER3Q2NL68 480 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 BTBD16Q32M84 506 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF404Q494X3 552 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TRIM61Q5EBN2 209 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC22A10Q63ZE4 541 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR6B2Q6IFH4 312 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ETFRF1Q6IPR1 90 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PNCKQ6P2M8 343 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SCARA5Q6ZMJ2 495 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TMC3Q7Z5M5 1100 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LAPTM4BQ86VI4 370 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ANKMY2Q8IV38 441 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ABI1Q8IZP0 508 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DAW1Q8N136 415 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR2T34Q8NGX1 318 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 OR2T3Q8NH03 318 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FANK1Q8TC84 345 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RNF139Q8WU17 664 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TM9SF4Q92544 642 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GGHQ92820 318 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UFD1Q92890 307 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 KCNN1Q92952 543 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SGTBQ96EQ0 304 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC39A13Q96H72 371 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SUCLG2Q96I99 432 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZSWIM1Q9BR11 485 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC30A2Q9BRI3 323 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TMEM246Q9BRR3 403 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MED18Q9BUE0 208 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 POLR1EQ9GZS1 481 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 TCEAL2Q9H3H9 227 aaPredicted RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms