RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 C1orf216Q8TAB5 229 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 GABPB2Q8TAK5 448 aaPredicted RBP14.04□□□□□ -0.16
RNF4-208ENST00000507247 GDAP1Q8TB36 358 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 EPS8L3Q8TE67 593 aaKnown RBP14.04□□□□□ -0.16
RNF4-208ENST00000507247 DCAKDQ8WVC6 231 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 SCG3Q8WXD2 468 aaKnown RBP14.04□□□□□ -0.16
RNF4-208ENST00000507247 DNASE2BQ8WZ79 361 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 LPGAT1Q92604 370 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 ZBTB9Q96C00 473 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 TCF12Q99081 682 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 WDR26Q9H7D7 661 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 INTS10Q9NVR2 710 aaKnown RBP14.04□□□□□ -0.16
RNF4-208ENST00000507247 NSMCE4AQ9NXX6 385 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 CRYL1Q9Y2S2 319 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 PCDHGA2Q9Y5H1 932 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 PRSS21Q9Y6M0 314 aa14.04□□□□□ -0.16
RNF4-208ENST00000507247 UBA6A0AVT1 1052 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 A6NNZ2 444 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 DYNC1I1O14576 645 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 WNT1P04628 370 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 MYCLP1P12525 358 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 AKT1P31749 480 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 CNR2P34972 360 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 GP5P40197 560 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 MSH2P43246 934 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 CD151P48509 253 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 DHPSP49366 369 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 CSE1LP55060 971 aaKnown RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 ZNF844Q08AG5 666 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 PDE1CQ14123 709 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 CTSL3PQ5NE16 218 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 RBM20Q5T481 1227 aaKnown RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 RNF187Q5TA31 235 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 ZNF549Q6P9A3 640 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 LAYNQ6UX15 382 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 CEP68Q76N32 757 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ADGRG6Q86SQ4 1221 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ZC3HC1Q86WB0 502 aaKnown RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 RGL4Q8IZJ4 473 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 RBFAQ8N0V3 343 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 OR13H1Q8NG92 308 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ATXN7L3BQ96GX2 97 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ZC3H10Q96K80 434 aaKnown RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 COPS8Q99627 209 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 RBBP8Q99708 897 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 MIR1-1HGQ9H1L0 117 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 P2RY12Q9H244 342 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 PHPT1Q9NRX4 125 aaPredicted RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 FAM86C1Q9NVL1 165 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ZNF446Q9NWS9 450 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 EURLQ9NYK6 297 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ATXN10Q9UBB4 475 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 CTNNAL1Q9UBT7 734 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 FETUBQ9UGM5 382 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 TMEM98Q9Y2Y6 226 aa14.03□□□□□ -0.16
RNF4-208ENST00000507247 ATXN2Q99700 1313 aaKnown RBP14.03□□□□□ -0.16
RNF4-208ENST00000507247 A0A1W2PR77 199 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 SMIM23A6NLE4 172 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 PRMT5O14744 637 aaPredicted RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 SGTAO43765 313 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 TCEA3O75764 348 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 SASH3O75995 380 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 INHBAP08476 426 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 HOXC4P09017 264 aaPredicted RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 MSH3P20585 1137 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 RPS3P23396 243 aaKnown RBP eCLIP14.02□□□□□ -0.17
RNF4-208ENST00000507247 ITPKAP23677 461 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 FMO4P31512 558 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 PPARGP37231 505 aaPredicted RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 SLCO1A2P46721 670 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 POLD2P49005 469 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 CTSCP53634 463 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 EIF3BP55884 814 aaKnown RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 KIAA1024LP59773 190 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 RACK1P63244 317 aaKnown RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 IFFO1Q0D2I5 559 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 TMEM115Q12893 351 aaPredicted RBP14.02□□□□□ -0.17
RNF4-208ENST00000507247 WDR45BQ5MNZ6 344 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 GRTP1Q5TC63 336 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 LYSMD4Q5XG99 296 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 KCTD16Q68DU8 428 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 DOK6Q6PKX4 331 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 ADGRD1Q6QNK2 874 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 LRIG3Q6UXM1 1119 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 Q6ZSR6 202 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 DET1Q7L5Y6 550 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 HDXQ7Z353 690 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 SLC22A18ASQ8N1D0 253 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 CLDN19Q8N6F1 224 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 RASGEF1AQ8N9B8 481 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 ACVR1CQ8NER5 493 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 VPS39Q96JC1 886 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 BIRC8Q96P09 236 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 NDNQ99608 321 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 TTC1Q99614 292 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 CCDC77Q9BR77 488 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 OR2AG1Q9H205 316 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 RHOJQ9H4E5 214 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 TRIM39Q9HCM9 518 aa14.02□□□□□ -0.17
RNF4-208ENST00000507247 TM9SF3Q9HD45 589 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms