RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 CACNA2D1P54289 1103 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 STX17P56962 302 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 SIM1P81133 766 aaPredicted RBP6.68□□□□□ -1.34
VIM-207ENST00000495528 TAF10Q12962 218 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 SEMA3BQ13214 749 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 SLC29A2Q14542 456 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PTPRRQ15256 657 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 EOGTQ5NDL2 527 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 LYSMD4Q5XG99 296 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PIP4P1Q86T03 277 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PEG10Q86TG7 708 aaKnown RBP6.68□□□□□ -1.34
VIM-207ENST00000495528 NELFCDQ8IXH7 590 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 CHCHD4Q8N4Q1 142 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 TRIML1Q8N9V2 468 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 MLKLQ8NB16 471 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 OR5B17Q8NGF7 314 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 NOC3LQ8WTT2 800 aaKnown RBP6.68□□□□□ -1.34
VIM-207ENST00000495528 HMGB4Q8WW32 186 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PCED1BQ96HM7 432 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 HPDLQ96IR7 371 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 FUCA2Q9BTY2 467 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 TTLL2Q9BWV7 592 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 GTPBP2Q9BX10 602 aaKnown RBP6.68□□□□□ -1.34
VIM-207ENST00000495528 TSPY26PQ9H489 355 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 BCCIPQ9P287 314 aaKnown RBP eCLIP6.68□□□□□ -1.34
VIM-207ENST00000495528 SEL1LQ9UBV2 794 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PILRBQ9UKJ0 227 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 EXOC7Q9UPT5 735 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 NME7Q9Y5B8 376 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 DMRT1Q9Y5R6 373 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 PTPRJQ12913 1337 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 ANK1P16157 1881 aa6.68□□□□□ -1.34
VIM-207ENST00000495528 IGF2RP11717 2491 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ASCC3Q8N3C0 2202 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 TCRBV21S2A2A0A5A6 115 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 TBC1D3BA6NDS4 549 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 F8VP50 259 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 SLC9A3R1O14745 358 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 OAS1P00973 400 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 MBL2P11226 248 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 WARSP23381 471 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 ANXA13P27216 316 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 HOXD13P35453 343 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 GNL1P36915 607 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 TNFRSF4P43489 277 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 STT3AP46977 705 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 PPP3CCP48454 512 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 PTDSS1P48651 473 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 NOP14P78316 857 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 KDSRQ06136 332 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ZNF169Q14929 603 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 MAPRE1Q15691 268 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 STX1AQ16623 288 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 INSCQ1MX18 579 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 DPCR1Q3MIW9 517 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 MDH1BQ5I0G3 518 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 SPDYCQ5MJ68 293 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 SYCP2LQ5T4T6 812 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 C11orf57Q6ZUT1 292 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 STXBP4Q6ZWJ1 553 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 RNF44Q7L0R7 432 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 MAVSQ7Z434 540 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 CBWD2Q8IUF1 395 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 SYCP3Q8IZU3 236 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 SPARTQ8N0X7 666 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 GPD1LQ8N335 351 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 KIAA0895Q8NCT3 520 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 DNAJB14Q8TBM8 379 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ANKRD36BP1Q96IX9 119 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 CEP295NLQ96MC4 621 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 MMS19Q96T76 1030 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 MRPL45Q9BRJ2 306 aaKnown RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 DPEP3Q9H4B8 488 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 TMEM30AQ9NV96 361 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ZNF212Q9UDV6 495 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 CHORDC1Q9UHD1 332 aaPredicted RBP6.67□□□□□ -1.34
VIM-207ENST00000495528 PHTF1Q9UMS5 762 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 DENND4CQ5VZ89 1909 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 BAHCC1Q9P281 2608 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 THADAQ6YHU6 1953 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 CACNA1EQ15878 2313 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ASPMQ8IZT6 3477 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 PCNX2A6NKB5 2137 aa6.67□□□□□ -1.34
VIM-207ENST00000495528 ZNF638Q14966 1978 aaKnown RBP6.66□□□□□ -1.34
VIM-207ENST00000495528 NUP205Q92621 2012 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 ZNF233A6NK53 670 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.66□□□□□ -1.34
VIM-207ENST00000495528 FOXN3O00409 490 aaPredicted RBP6.66□□□□□ -1.34
VIM-207ENST00000495528 CLIC2O15247 247 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 AP5Z1O43299 807 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 COCHO43405 550 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 SRGAP2O75044 1071 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 TULP3O75386 442 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 VNN1O95497 513 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 TNNC2P02585 160 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 CD59P13987 128 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 GABRG2P18507 467 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 ACVR2AP27037 513 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 LIPAP38571 399 aa6.66□□□□□ -1.34
VIM-207ENST00000495528 HMGA2P52926 109 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms