RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TMEM40Q8WWA1 233 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CNOT6Q9ULM6 557 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 SYN3O14994 580 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ZBTB14O43829 449 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 RFPL1O75677 317 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 NDST3O95803 873 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CTNNB1P35222 781 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CAPGP40121 348 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 RPS24P62847 133 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 MBLAC2Q68D91 279 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ZYG11AQ6WRX3 759 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 TRAPPC5Q8IUR0 188 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 TSEN34Q9BSV6 310 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 CFAP97Q9P2B7 532 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 INVSQ9Y283 1065 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 DYRK1BQ9Y463 629 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 RAI2Q9Y5P3 530 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 GMPPBQ9Y5P6 360 aa16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 ZFP37Q9Y6Q3 630 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-209ENST00000494080 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 TFECO14948 347 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 BEST1O76090 585 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 CLIC3O95833 236 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF182P17025 639 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 MAPK1P28482 360 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 BCAP31P51572 246 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF697Q5TEC3 545 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 TMEM53Q6P2H8 277 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 DOK6Q6PKX4 331 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 FSTL5Q8N475 847 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 NPY6RQ99463 290 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 OLFM1Q99784 485 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 EVLQ9UI08 416 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 OAZ3Q9UMX2 235 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 GABRQQ9UN88 632 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 AZIN1O14977 448 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 CNMDO75829 334 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 ADH1AP07327 375 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 SCNN1AP37088 669 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 PWP1Q13610 501 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 PDZK1Q5T2W1 519 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 SELENOMQ8WWX9 145 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 CITED4Q96RK1 184 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 SLC39A3Q9BRY0 314 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 IGFLR1Q9H665 355 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 RPRD1BQ9NQG5 326 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 EFCAB10A6NFE3 127 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 AOC2O75106 756 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 SORBS2O94875 1100 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 CYP4B1P13584 511 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 HOXA11P31270 313 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 IDH2P48735 452 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 GPR15P49685 360 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 FBXL19Q6PCT2 694 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 NPAS4Q8IUM7 802 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 FBXO22Q8NEZ5 403 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 ENKURQ8TC29 256 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 ISOC1Q96CN7 298 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 PRICKLE1Q96MT3 831 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 KLHL3Q9UH77 587 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 STBD1O95210 358 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 IRF9Q00978 393 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 TRIM32Q13049 653 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 PAOXQ6QHF9 649 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 VRTNQ9H8Y1 702 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 GKN1Q9NS71 199 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 STMN3Q9NZ72 180 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 GNPTGQ9UJJ9 305 aa16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 MRPS23Q9Y3D9 190 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 TNPO3Q9Y5L0 923 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-209ENST00000494080 TBC1D3BA6NDS4 549 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 IPO13O94829 963 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 THRBP10828 461 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 NCK1P16333 377 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 CLDN10P78369 228 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 GHRHRQ02643 423 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 ZNF252P-AS1Q0IIN9 211 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 SMARCB1Q12824 385 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 CPSF6Q16630 551 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 PPP4R4Q6NUP7 873 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 KCTD13Q8WZ19 329 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM159BA6NKW6 160 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 VPS4BO75351 444 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 BCAS2O75934 225 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 ANXA5P08758 320 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 COPZ1P61923 177 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 ECT2LQ008S8 904 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 IRF8Q02556 426 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 SLC10A7Q0GE19 358 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 PRKG2Q13237 762 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 FNDC3BQ53EP0 1204 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 SETMARQ53H47 684 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 RALGPS2Q86X27 583 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 GATAD2AQ86YP4 633 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 ARL14EPQ8N8R7 260 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 C19orf18Q8NEA5 215 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 Q9Y3F1 56 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 RPP40O75818 363 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 CDK4P11802 303 aa16.18■□□□□ 0.18
CCDC88B-209ENST00000494080 GPC1P35052 558 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms