RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PDE1BQ01064 536 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 ANKRD20A8PQ5CZ79 823 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 ALG1LQ6GMV1 187 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 HPS6Q86YV9 775 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 TRIM11Q96F44 468 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 ELMO2Q96JJ3 720 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 ERGIC2Q96RQ1 377 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 BRD8Q9H0E9 1235 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 ACSS2Q9NR19 701 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 KLC4Q9NSK0 619 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.42□□□□□ -0.42
SKA3-206ENST00000475251 TAS2R14Q9NYV8 317 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 RCOR3Q9P2K3 495 aaPredicted RBP12.42□□□□□ -0.42
SKA3-206ENST00000475251 RARRES3Q9UL19 164 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 CNOT6Q9ULM6 557 aaKnown RBP12.42□□□□□ -0.42
SKA3-206ENST00000475251 MYO6Q9UM54 1294 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 MAP4K5Q9Y4K4 846 aa12.42□□□□□ -0.42
SKA3-206ENST00000475251 PCYT1BQ9Y5K3 369 aaPredicted RBP12.42□□□□□ -0.42
SKA3-206ENST00000475251 USP9XQ93008 2570 aaPredicted RBP12.42□□□□□ -0.42
SKA3-206ENST00000475251 SPTAN1Q13813 2472 aaKnown RBP12.42□□□□□ -0.42
SKA3-206ENST00000475251 ICE1Q9Y2F5 2266 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 SPTBN1Q01082 2364 aaKnown RBP12.41□□□□□ -0.42
SKA3-206ENST00000475251 PDZK1P1A8MUH7 402 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 FADS2P1A8MWK0 482 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 DNAJB5O75953 348 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 PDGFAP04085 211 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 MYBL1P10243 752 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 GZMAP12544 262 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ZNF165P49910 485 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 RPS15P62841 145 aaKnown RBP12.41□□□□□ -0.42
SKA3-206ENST00000475251 UGT8Q16880 541 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 INSCQ1MX18 579 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 SMTNL2Q2TAL5 461 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ZNF569Q5MCW4 686 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 CACHD1Q5VU97 1274 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 SYVN1Q86TM6 617 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 TMEM135Q86UB9 458 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 LPCAT1Q8NF37 534 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 CT55Q8WUE5 264 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 TEKT4Q8WW24 435 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 KLHL6Q8WZ60 621 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 UBXN4Q92575 508 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 HSPH1Q92598 858 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 RAB33BQ9H082 229 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ACTL8Q9H568 366 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 PCDH9Q9HC56 1237 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 TRIM39Q9HCM9 518 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 RAD18Q9NS91 495 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ETNK2Q9NVF9 386 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 FANCLQ9NW38 375 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 OGFRQ9NZT2 677 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ATXN10Q9UBB4 475 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 EPHA6Q9UF33 1036 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 CHKBQ9Y259 395 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 ZNF451Q9Y4E5 1061 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 NBPF19A0A087WUL8 3843 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 MYO9AB2RTY4 2548 aa12.41□□□□□ -0.42
SKA3-206ENST00000475251 SPENQ96T58 3664 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 KMOO15229 486 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 DPM1O60762 260 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 SORBS2O94875 1100 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 SLC25A14O95258 325 aaPredicted RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 ZNF8P17098 575 aaPredicted RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 VCLP18206 1134 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 NELFEP18615 380 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 PTPN4P29074 926 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 LEPRP48357 1165 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 ACY1Q03154 408 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 TUBB3Q13509 450 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 CHRNA6Q15825 494 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 TDRD12Q587J7 1177 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 CCDC122Q5T0U0 273 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 PAPD7Q5XG87 772 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 PDPK2PQ6A1A2 396 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 KLHL35Q6PF15 583 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 MAMDC2Q7Z304 686 aaPredicted RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 IRF2BP2Q7Z5L9 587 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 FATE1Q969F0 183 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 ZNF653Q96CK0 615 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 CXorf40BQ96DE9 158 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 SMIM14Q96QK8 99 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 TIMM29Q9BSF4 260 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 SYT11Q9BT88 431 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 ZSCAN5AQ9BUG6 496 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 ADGRE3Q9BY15 652 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 TRIM55Q9BYV6 548 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 OR2AG1Q9H205 316 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 MLXIPLQ9NP71 852 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 LIMA1Q9UHB6 759 aaKnown RBP12.4□□□□□ -0.42
SKA3-206ENST00000475251 TTLL3Q9Y4R7 772 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 ADGRG1Q9Y653 693 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 SLC30A1Q9Y6M5 507 aa12.4□□□□□ -0.42
SKA3-206ENST00000475251 SNPHO15079 494 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 MATN3O15232 486 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 SEMA7AO75326 666 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 FTLP02792 175 aaPredicted RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 RARAP10276 462 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 CDK11BP21127 795 aaKnown RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 SLC19A1P41440 591 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 DSC2Q02487 901 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms