RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SPO11	Q9Y5K1	396 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	APC2	O95996	2303 aa		11.41	□□□□□ -0.58
CPNE1-222	ENST00000473373	GLYATL1P3	A0A0U1RQE8	302 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	LOC285095	A0A1B0GVY8	99 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373		E7EVH7	732 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	AURKA	O14965	403 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	NUAK1	O60285	661 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	DNAJC6	O75061	913 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	MTX2	O75431	263 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	CDK14	O94921	469 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	TNFSF15	O95150	251 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	CRTAM	O95727	393 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	GAS8	O95995	478 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	EPO	P01588	193 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	FUCA1	P04066	466 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	PNLIP	P16233	465 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF8	P17098	575 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	HMGCL	P35914	325 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	LSS	P48449	732 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	OR1D5	P58170	312 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	HHEX	Q03014	270 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	NFATC2	Q13469	925 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ITGA9	Q13797	1035 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	SEPT6	Q14141	434 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	RPS6KA1	Q15418	735 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	SEPT7	Q16181	437 aa	Known RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	P3H1	Q32P28	736 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	OGFOD3	Q6PK18	319 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	USP53	Q70EK8	1073 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	RAB11FIP2	Q7L804	512 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	SLC9B2	Q86UD5	537 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF761	Q86XN6	746 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	NRROS	Q86YC3	692 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	NAGS	Q8N159	534 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	TAB3	Q8N5C8	712 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	FAM71D	Q8N9W8	422 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF248	Q8NDW4	579 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ANP32B	Q92688	251 aa	Known RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	TADA1	Q96BN2	335 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ZNF578	Q96N58	590 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	PLEKHG4B	Q96PX9	1271 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	WDR24	Q96S15	920 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	TBL1Y	Q9BQ87	522 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	HERPUD2	Q9BSE4	406 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	RDH14	Q9HBH5	336 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	KLC4	Q9NSK0	619 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	PISD	Q9UG56	409 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	APPL1	Q9UKG1	709 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373	ADGRG1	Q9Y653	693 aa		11.4	□□□□□ -0.58
CPNE1-222	ENST00000473373		A0A087WV48	116 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	KMO	O15229	486 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	DDX3Y	O15523	660 aa	Known RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	VEGFD	O43915	354 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CPNE6	O95741	557 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	IFNB1	P01574	187 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	MSH3	P20585	1137 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	LPO	P22079	712 aa	Predicted RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	ITPKB	P27987	946 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	PBLD	P30039	288 aa	Predicted RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	MAPK10	P53779	464 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	TMPRSS15	P98073	1019 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	PDE1B	Q01064	536 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	EIF3I	Q13347	325 aa	Known RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SPARCL1	Q14515	664 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SNAP47	Q5SQN1	464 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	LDLRAP1	Q5SW96	308 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	OR10G6	Q8NH81	332 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	BRSK1	Q8TDC3	778 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SLC37A2	Q8TED4	501 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	KCNE4	Q8WWG9	221 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SH3KBP1	Q96B97	665 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CCDC97	Q96F63	343 aa	Predicted RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SCARF2	Q96GP6	870 aa	Predicted RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	SMG1	Q96Q15	3661 aa	Known RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CMKLR1	Q99788	373 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	TMEM121	Q9BTD3	319 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CRLS1	Q9UJA2	301 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CNOT6	Q9ULM6	557 aa	Known RBP	11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	ZNF148	Q9UQR1	794 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	ARL5A	Q9Y689	179 aa		11.39	□□□□□ -0.59
CPNE1-222	ENST00000473373	CELSR3	Q9NYQ7	3312 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373		A0A1W2PQM1	296 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	OR5K4	A6NMS3	321 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	GPR89A	B7ZAQ6	455 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	NTN3	O00634	580 aa	Predicted RBP	11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	PLD2	O14939	933 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	CASC3	O15234	703 aa	Known RBP	11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	PSMD3	O43242	534 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	TLX3	O43711	291 aa	Predicted RBP	11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	DUX1	O43812	170 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	PPFIA2	O75334	1257 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	PRAMEF1	O95521	474 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	VIP	P01282	170 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	GPR89B	P0CG08	455 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	ZNF7	P17097	686 aa	Predicted RBP	11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	HAL	P42357	657 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	GPR3	P46089	330 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	ERVPABLB-1	P60509	514 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	C19orf57	Q0VDD7	668 aa		11.38	□□□□□ -0.59
CPNE1-222	ENST00000473373	SNX1	Q13596	522 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms