RNA–Protein interactions for RNA: ENST00000470247.1

SREBF1-209, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 5

Gene SREBF1, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-209	ENST00000470247	TDRP	Q86YL5	185 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	SPNS2	Q8IVW8	549 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	CYP4X1	Q8N118	509 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	EPS8L3	Q8TE67	593 aa	Known RBP	11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	NAT14	Q8WUY8	206 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	FOXJ1	Q92949	421 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	MRRF	Q96E11	262 aa	Known RBP	11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	HIC2	Q96JB3	615 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	SERAC1	Q96JX3	654 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	ZC3H10	Q96K80	434 aa	Known RBP	11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	HSPA12B	Q96MM6	686 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	SLC6A18	Q96N87	628 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	P2RY12	Q9H244	342 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	TRIM39	Q9HCM9	518 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	INTS10	Q9NVR2	710 aa	Known RBP	11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	ATXN10	Q9UBB4	475 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	SLC24A2	Q9UI40	661 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	ZNF180	Q9UJW8	692 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	CRYL1	Q9Y2S2	319 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	MED16	Q9Y2X0	877 aa		11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.14	□□□□□ -0.63
SREBF1-209	ENST00000470247	PRMT5	O14744	637 aa	Predicted RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	FPGT	O14772	594 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	NDUFS3	O75489	264 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	RPS3	P23396	243 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	PML	P29590	882 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CNR2	P34972	360 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	MSH2	P43246	934 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	SLCO1A2	P46721	670 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CD151	P48509	253 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	POLD2	P49005	469 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CTSC	P53634	463 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	TMEM115	Q12893	351 aa	Predicted RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	AARS2	Q5JTZ9	985 aa	Known RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	LDLRAP1	Q5SW96	308 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	RBM20	Q5T481	1227 aa	Known RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	GRTP1	Q5TC63	336 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	LYPLAL1	Q5VWZ2	237 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	KYAT3	Q6YP21	454 aa	Known RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	LPCAT2	Q7L5N7	544 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	HDX	Q7Z353	690 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	C11orf74	Q86VG3	221 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	SLC22A18AS	Q8N1D0	253 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CLDN19	Q8N6F1	224 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	OTUD6B	Q8N6M0	293 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	RASGEF1A	Q8N9B8	481 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	MZB1	Q8WU39	189 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	ZBTB9	Q96C00	473 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	VPS39	Q96JC1	886 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	COPS8	Q99627	209 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	RBBP8	Q99708	897 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	C1QTNF1	Q9BXJ1	281 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	RHOJ	Q9H4E5	214 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	WDR26	Q9H7D7	661 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	VIPAS39	Q9H9C1	493 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	NSMCE4A	Q9NXX6	385 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CTNNAL1	Q9UBT7	734 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	TMEM98	Q9Y2Y6	226 aa		11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	MTO1	Q9Y2Z2	717 aa	Known RBP	11.13	□□□□□ -0.63
SREBF1-209	ENST00000470247	CUL9	Q8IWT3	2517 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	THADA	Q6YHU6	1953 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	TMEM202	A6NGA9	273 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	RASGRF2	O14827	1237 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	CHUK	O15111	745 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	DNAJC6	O75061	913 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	CEACAM5	P06731	702 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	MYCLP1	P12525	358 aa	Predicted RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	ATP1B2	P14415	290 aa	Predicted RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	ZNF8	P17098	575 aa	Predicted RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	ITPKA	P23677	461 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	FMO4	P31512	558 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	NSG1	P42857	185 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	CSRP3	P50461	194 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	PGGT1B	P53609	377 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	LIMK2	P53671	638 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	EIF3B	P55884	814 aa	Known RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	KIAA1024L	P59773	190 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	YPEL5	P62699	121 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	RACK1	P63244	317 aa	Known RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	TNFAIP8L3	Q5GJ75	292 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	RNF187	Q5TA31	235 aa	Predicted RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	MACC1	Q6ZN28	852 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247		Q6ZSR6	202 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	ARMCX6	Q7L4S7	300 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	PHYKPL	Q8IUZ5	450 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	ZNF547	Q8IVP9	402 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	RBFA	Q8N0V3	343 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	OR13H1	Q8NG92	308 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	LKAAEAR1	Q8TD35	194 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	HEXDC	Q8WVB3	486 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	SNX19	Q92543	992 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	SGF29	Q96ES7	293 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	SCARF2	Q96GP6	870 aa	Predicted RBP	11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	GPR22	Q99680	433 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	CCDC77	Q9BR77	488 aa		11.12	□□□□□ -0.63
SREBF1-209	ENST00000470247	AARSD1	Q9BTE6	412 aa	Known RBP	11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms