RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OR56A4Q8NGH8 313 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 PIH1D2Q8WWB5 315 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.93□□□□□ -0.022e-6■■■■□ 26.2
LDLR-202ENST00000455727 ZNF689Q96CS4 500 aaPredicted RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 TOX2Q96NM4 488 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 SLC22A12Q96S37 553 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 HGH1Q9BTY7 390 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 GPR63Q9BZJ6 419 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 TMEM45AQ9NWC5 275 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 INSL5Q9Y5Q6 135 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 GPR45Q9Y5Y3 372 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 SLC30A1Q9Y6M5 507 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 DENND4CQ5VZ89 1909 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 ANKRD12Q6UB98 2062 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 H0YJX3 145 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 PRMT5O14744 637 aaPredicted RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 SNX2O60749 519 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 RNASEH2AO75792 299 aaKnown RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 SLC7A1P30825 629 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 CSKP41240 450 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 CSNK1DP48730 415 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 CDH18Q13634 790 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 RPS6KA2Q15349 733 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 SPOUT1Q5T280 376 aaKnown RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 RNF220Q5VTB9 566 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 IL23RQ5VWK5 629 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 RETSATQ6NUM9 610 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 BLOC1S3Q6QNY0 202 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 UGT2A3Q6UWM9 527 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 TAS2R42Q7RTR8 314 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 SYVN1Q86TM6 617 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 ITIH5Q86UX2 942 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 ST13P4Q8IZP2 240 aaPredicted RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 SNX31Q8N9S9 440 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 GRIN3AQ8TCU5 1115 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 EID2BQ96D98 161 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 DEFB118Q96PH6 123 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 C2orf49Q9BVC5 232 aaPredicted RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 SLC52A3Q9NQ40 469 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 ZNF225Q9UK10 706 aa14.93□□□□□ -0.02
LDLR-202ENST00000455727 FCF1Q9Y324 198 aaKnown RBP14.93□□□□□ -0.02
LDLR-202ENST00000455727 ZNF106Q9H2Y7 1883 aaKnown RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 CARNS1A5YM72 827 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 NR5A2O00482 541 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 E2F3O00716 465 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ANGPT2O15123 496 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 DNAJA2O60884 412 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 URODP06132 367 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 RPS3P23396 243 aaKnown RBP eCLIP14.92□□□□□ -0.021e-7■■□□□ 12
LDLR-202ENST00000455727 AGTR2P50052 363 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 SLC7A2P52569 658 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 CHN2P52757 468 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ATXN3P54252 364 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 FOXM1Q08050 763 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 RALGDSQ12967 914 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 PTPRRQ15256 657 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 C6orf10Q5SRN2 563 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 FBXL19Q6PCT2 694 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 LAYNQ6UX15 382 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 SLC39A5Q6ZMH5 540 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 CPNE9Q8IYJ1 553 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 PHC3Q8NDX5 983 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ATP6V1E2Q96A05 226 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ACDQ96AP0 544 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ZUFSPQ96AP4 578 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 MYO19Q96H55 970 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ZNF382Q96SR6 550 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 UHRF1Q96T88 793 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 IL21Q9HBE4 155 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 GID8Q9NWU2 228 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 NUDT4Q9NZJ9 180 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 BTRCQ9Y297 605 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 GIPC1O14908 333 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 STAMBPO95630 424 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 CYBBP04839 570 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 CAPN3P20807 821 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 MAPK8P45983 427 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ZXDBP98169 803 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 TLR1Q15399 786 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 TGFBIQ15582 683 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ATXN7L2Q5T6C5 722 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 GPRIN3Q6ZVF9 776 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 LYSMD3Q7Z3D4 306 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 DDX53Q86TM3 631 aaKnown RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 ARL14EPQ8N8R7 260 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 PBXIP1Q96AQ6 731 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 YIPF3Q9GZM5 350 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 ZNF334Q9HCZ1 680 aaPredicted RBP14.92□□□□□ -0.02
LDLR-202ENST00000455727 AIG1Q9NVV5 245 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 CD274Q9NZQ7 290 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 GIMAP2Q9UG22 337 aa14.92□□□□□ -0.02
LDLR-202ENST00000455727 SCN8AQ9UQD0 1980 aa14.91□□□□□ -0.02
LDLR-202ENST00000455727 NCF1BA6NI72 391 aaPredicted RBP14.91□□□□□ -0.02
LDLR-202ENST00000455727 NCF1CA8MVU1 366 aaPredicted RBP14.91□□□□□ -0.02
LDLR-202ENST00000455727 TXNDC9O14530 226 aa14.91□□□□□ -0.02
LDLR-202ENST00000455727 HTRA2O43464 458 aaPredicted RBP14.91□□□□□ -0.02
LDLR-202ENST00000455727 PRAMEF12O95522 483 aa14.91□□□□□ -0.02
LDLR-202ENST00000455727 HSD17B1P14061 328 aa14.91□□□□□ -0.02
LDLR-202ENST00000455727 NCF1P14598 390 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms