RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 C9orf72Q96LT7 481 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 TTC25Q96NG3 672 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 EDEM2Q9BV94 578 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 ZDHHC5Q9C0B5 715 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 TRIM39Q9HCM9 518 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 CATSPERZQ9NTU4 200 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 C20orf96Q9NUD7 363 aaPredicted RBP13.76□□□□□ -0.21
TPM3-211ENST00000368531 MARCH4Q9P2E8 410 aaPredicted RBP13.76□□□□□ -0.21
TPM3-211ENST00000368531 ZNHIT2Q9UHR6 403 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 GPSM3Q9Y4H4 160 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 MUC6Q6W4X9 2439 aa13.76□□□□□ -0.21
TPM3-211ENST00000368531 ZCWPW2A0A1B0GU75 182 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 EIF3HO15372 352 aaKnown RBP eCLIP13.75□□□□□ -0.21
TPM3-211ENST00000368531 CD3EAPO15446 510 aaKnown RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 CDK14O94921 469 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 CER1O95813 267 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 F7P08709 466 aaPredicted RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 ERVK-10P10266 1014 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 CTSEP14091 401 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 ZNF8P17098 575 aaPredicted RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 MAGEA4P43358 317 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 TMEM115Q12893 351 aaPredicted RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 BNIP3Q12983 259 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 C1orf61Q13536 156 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 CUL1Q13616 776 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 THOC5Q13769 683 aaKnown RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 GTF2H3Q13889 308 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 SEMA3AQ14563 771 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 CRYMQ14894 314 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 DBN1Q16643 649 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 LONRF1Q17RB8 773 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 ZNF423Q2M1K9 1284 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 UAP1L1Q3KQV9 507 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 GPR33Q49SQ1 333 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 SPANXN3Q5MJ09 141 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 LDLRAP1Q5SW96 308 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 KIAA0930Q6ICG6 404 aaPredicted RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 CRTC3Q6UUV7 619 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 UNC5AQ6ZN44 842 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 GSPT2Q8IYD1 628 aaKnown RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 PHACTR4Q8IZ21 702 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 NXPE1Q8N323 547 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 UBXN4Q92575 508 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 DCUN1D1Q96GG9 259 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 FMO2Q99518 471 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 ELF4Q99607 663 aaPredicted RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 NAT9Q9BTE0 207 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 SLC13A1Q9BZW2 595 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 ERVMER34-1Q9H9K5 563 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 CARS2Q9HA77 564 aaKnown RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 PPANQ9NQ55 473 aaKnown RBP13.75□□□□□ -0.21
TPM3-211ENST00000368531 SUFUQ9UMX1 484 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 SLC17A4Q9Y2C5 497 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 FAM169AQ9Y6X4 670 aa13.75□□□□□ -0.21
TPM3-211ENST00000368531 A0A1B0GTQ1 180 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 H3BM21 787 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 HAX1O00165 279 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 TNFRSF10CO14798 259 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 GDF9O60383 454 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 TTC4O95801 387 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 CSF2P04141 144 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ACRV1P26436 265 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ECHS1P30084 290 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 SSTR1P30872 391 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ARCN1P48444 511 aaKnown RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 ARRB1P49407 418 aaPredicted RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 HK3P52790 923 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 SHBQ15464 509 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 PLA2G4EQ3MJ16 856 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ARMC3Q5W041 872 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 NEPROQ6NW34 567 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 KCNMB4Q86W47 210 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 GATAD2AQ86YP4 633 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 CCNJLQ8IV13 435 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 KIAA2013Q8IYS2 634 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 GPR161Q8N6U8 529 aaKnown RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 RASGEF1AQ8N9B8 481 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 DDHD1Q8NEL9 900 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 LMX1AQ8TE12 382 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 COPS8Q99627 209 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 BOCQ9BWV1 1114 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 FOXP3Q9BZS1 431 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ANKZF1Q9H8Y5 726 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 IARS2Q9NSE4 1012 aaKnown RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 SMOXQ9NWM0 555 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 ZDHHC3Q9NYG2 299 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 APOBEC3BQ9UH17 382 aaKnown RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 PLEKHM1Q9Y4G2 1056 aa13.74□□□□□ -0.21
TPM3-211ENST00000368531 PCYT1BQ9Y5K3 369 aaPredicted RBP13.74□□□□□ -0.21
TPM3-211ENST00000368531 ZFC3H1O60293 1989 aaKnown RBP13.73□□□□□ -0.21
TPM3-211ENST00000368531 TRBV5-4A0A0C4DH59 114 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 OR2AG2A6NM03 316 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 AGAP14A8MT82 685 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 CDX4O14627 284 aaPredicted RBP13.73□□□□□ -0.21
TPM3-211ENST00000368531 GRID2O43424 1007 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 VEGFDO43915 354 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 NUAK1O60285 661 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 DNAJC6O75061 913 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 NDUFS3O75489 264 aa13.73□□□□□ -0.21
TPM3-211ENST00000368531 IVLP07476 585 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms