RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF570Q96NI8 536 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 NDUFA9Q16795 377 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 BAIAP2L2Q6UXY1 529 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 RIOX2Q8IUF8 465 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SNX33Q8WV41 574 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ASB9Q96DX5 294 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 CAMK1GQ96NX5 476 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 BRWD1Q9NSI6 2320 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SLC12A8A0AV02 714 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 DHX15O43143 795 aaKnown RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TACSTD2P09758 323 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 CETPP11597 493 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 PGDP52209 483 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 MANFP55145 182 aaKnown RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SERPINA13PQ6UXR4 307 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TIFAQ96CG3 184 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SYT15Q9BQS2 421 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ACTR6Q9GZN1 396 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 NCKAP1Q9Y2A7 1128 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 FPGTO14772 594 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 GNAZP19086 355 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 GLDCP23378 1020 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 AP2S1P53680 142 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 CDKL4Q5MAI5 379 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 PHF13Q86YI8 300 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TCEAL7Q9BRU2 100 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 COPS4Q9BT78 406 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SLC28A2O43868 658 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 KRT33AO76009 404 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 DCDC1P59894 354 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF181Q2M3W8 571 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 AP5B1Q2VPB7 878 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TNS4Q8IZW8 715 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SLC30A2Q9BRI3 323 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 CD93Q9NPY3 652 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 NUDT15Q9NV35 164 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 COPZ2Q9P299 210 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 RAP2AP10114 183 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 LCN1P31025 176 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 CXorf57Q6NSI4 855 aaKnown RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TMEM161BQ8NDZ6 487 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 STOML3Q8TAV4 291 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF471Q9BX82 626 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SVILO95425 2214 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 GTPBP1O00178 669 aaKnown RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SLC44A3Q8N4M1 653 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 NMUR2Q9GZQ4 415 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 RNF38Q9H0F5 515 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TMX2Q9Y320 296 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 KERAO60938 352 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF3P17036 446 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 LPOP22079 712 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF829Q3KNS6 432 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 PLEKHN1Q494U1 663 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 KLHL35Q6PF15 583 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 FRRS1Q6ZNA5 592 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 HSFY1Q96LI6 401 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SMU1Q2TAY7 513 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 UNC5AQ6ZN44 842 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 EGFL6Q8IUX8 553 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 OR4C6Q8NH72 309 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 FAM151AQ8WW52 585 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 IRF2BPLQ9H1B7 796 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PCDH18Q9HCL0 1135 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 TMEM5Q9Y2B1 443 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 IGFALSP35858 605 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 MAPK12P53778 367 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 AQP4P55087 323 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 POU5F1Q01860 360 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PRAMEF17Q5VTA0 474 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CD163L1Q9NR16 1453 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 ILVBLA1L0T0 632 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 TCEAL4Q96EI5 215 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 AHCYL2Q96HN2 611 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 UBQLN2Q9UHD9 624 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF208O43345 1280 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 LINGO3P0C6S8 592 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 YBX3P16989 372 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CEBPGP53567 150 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 LAPTM5Q13571 262 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 TIGD6Q17RP2 521 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 RASGEF1CQ8N431 466 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PCDHB5Q9Y5E4 795 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 FKBP7Q9Y680 259 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CNTNAP2Q9UHC6 1331 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PRR5-ARHGAP8B1AHC4 643 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 M0R233 179 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PAPSS1O43252 624 aaPredicted RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 HTR2AP28223 471 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PEX2P28328 305 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CD86P42081 329 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 TUFMP49411 452 aaKnown RBP14.18□□□□□ -0.14
COL7A1-201ENST00000328333 ARHGAP8P85298 464 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 GXYLT1Q4G148 440 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 SCUBE3Q8IX30 993 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 CCDC54Q8NEL0 328 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 OR10H5Q8NGA6 315 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PCDHB1Q9Y5F3 818 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 PCDH8O95206 1070 aa14.18□□□□□ -0.14
COL7A1-201ENST00000328333 MAGEA8P43361 318 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms