RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ACBD6Q9BR61 282 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 PAIP1Q9H074 479 aaKnown RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 CXorf21Q9HAI6 301 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 AGPAT4Q9NRZ5 378 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ASPDHA6ND91 283 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 NPEPPSL1A6NEC2 478 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 RHOBTB1O94844 696 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ATXN1LP0C7T5 689 aaKnown RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 ZNF37AP17032 561 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 LBPP18428 481 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ELK4P28324 431 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 CREB5Q02930 508 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 CLCQ05315 142 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 TNK2Q07912 1038 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 EIF4EBP2Q13542 120 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 KCTD21Q4G0X4 260 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 BRMS1LQ5PSV4 323 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ELMSAN1Q6PJG2 1045 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 CD300LGQ6UXG3 332 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 L3HYPDHQ96EM0 354 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 KCTD14Q9BQ13 255 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 MFSD1Q9H3U5 465 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 SMOC2Q9H3U7 446 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ALG2Q9H553 416 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ARMC1Q9NVT9 282 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 RNF112Q9ULX5 631 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 DOLKQ9UPQ8 538 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 A0A087WXM4 84 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ACOX3O15254 700 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 SLC7A4O43246 635 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 B4GALT3O60512 393 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 DNAJB1P25685 340 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 HALP42357 657 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 IST1P53990 364 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 TSPY1Q01534 308 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 BNIP3Q12983 259 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 RAB39AQ14964 217 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 C18orf21Q32NC0 220 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 MS4A13Q5J8X5 152 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 GET4Q7L5D6 327 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 RAB44Q7Z6P3 723 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 MRPL10Q7Z7H8 261 aaKnown RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 GPR180Q86V85 440 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 FBXO39Q8N4B4 442 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ARRDC2Q8TBH0 407 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 ROPN1LQ96C74 230 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 PPM1MQ96MI6 270 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 RPRD1AQ96P16 312 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 NPLQ9BXD5 320 aaPredicted RBP9.98□□□□□ -0.81
LIG3-201ENST00000262327 GMIPQ9P107 970 aa9.98□□□□□ -0.81
LIG3-201ENST00000262327 CKBP12277 381 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 PORP16435 677 aaPredicted RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 POLR2IP36954 125 aaKnown RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 ACADVLP49748 655 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 CCT8P50990 548 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ZNF135P52742 658 aaPredicted RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 TBX4P57082 545 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ZNF33AQ06730 810 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 PIGFQ07326 219 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 DSC3Q14574 896 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 RBBP7Q16576 425 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 AARS2Q5JTZ9 985 aaKnown RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 ANKRD34AQ69YU3 496 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 FBXL22Q6P050 247 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 KCTD8Q6ZWB6 473 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 LYSMD3Q7Z3D4 306 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 KIAA2013Q8IYS2 634 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 DNAJC5GQ8N7S2 189 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 TMEM125Q96AQ2 219 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 THAP11Q96EK4 314 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 CENPNQ96H22 339 aaPredicted RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 RPF2Q9H7B2 306 aaKnown RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 BPIFA1Q9NP55 256 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 PADI3Q9ULW8 664 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 PRG3Q9Y2Y8 225 aaPredicted RBP9.97□□□□□ -0.81
LIG3-201ENST00000262327 MIA3Q5JRA6 1907 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 A0A0D9SEW6 157 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 MROH6A6NGR9 719 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 H0YJX3 145 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 J3QRK9 145 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 BTN3A1O00481 513 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 TNFRSF10BO14763 440 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 OR1I1O60431 355 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ZNF623O75123 536 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ECI2O75521 394 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 GSTT2P0CG29 244 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 GSTT2BP0CG30 244 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 FDXRP22570 491 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 HOXC13P31276 330 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 CYP2C18P33260 490 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 GGT5P36269 586 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 OR4D2P58180 307 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 MTPNP58546 118 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ATP6V0D1P61421 351 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 SELPLGQ14242 412 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 SLC36A3Q495N2 470 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 OGFOD2Q6N063 350 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 DHRSXQ8N5I4 330 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 CDYL2Q8N8U2 506 aa9.97□□□□□ -0.81
LIG3-201ENST00000262327 ATAD1Q8NBU5 361 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms