RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 C8BP07358 591 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 YBX3P16989 372 aaKnown RBP eCLIP10.38□□□□□ -0.752e-7■■□□□ 12.9
VCL-201ENST00000211998 KLRC2P26717 231 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 RPA4Q13156 261 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PAOXQ6QHF9 649 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 C12orf50Q8NA57 414 aaPredicted RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 DNAJC19Q96DA6 116 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 FRMD6Q96NE9 622 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 BIRC8Q96P09 236 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 MTMR9Q96QG7 549 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 P2RX7Q99572 595 aaKnown RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 ABCG8Q9H221 673 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PRDM8Q9NQV8 689 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 ELOVL7A1L3X0 281 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 SLC28A1O00337 649 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PDPK1O15530 556 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PLIN3O60664 434 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 FABP3P05413 133 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 GSTT2P0CG29 244 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 GSTT2BP0CG30 244 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 GLDCP23378 1020 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 HTR2BP41595 481 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 CDH8P55286 799 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 PPP2R2BQ00005 443 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 MPP1Q00013 466 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 DACT2Q5SW24 774 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 STXBP5Q5T5C0 1151 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 LAPTM4BQ86VI4 370 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 NKAPQ8N5F7 415 aaKnown RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 NAT16Q8N8M0 369 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 TRMOQ9BU70 441 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 MRIQ9BWK5 157 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 CFL2Q9Y281 166 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 FGF10O15520 208 aaPredicted RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 CYP3A5P20815 502 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 POLR2LP62875 67 aaKnown RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 TXNDC11Q6PKC3 985 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 CIR1Q86X95 450 aaPredicted RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 PHF13Q86YI8 300 aaPredicted RBP10.38□□□□□ -0.75
VCL-201ENST00000211998 DEFB106AQ8N104 65 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 STK40Q8N2I9 435 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 SHC3Q92529 594 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 ART5Q96L15 291 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 TTYH2Q9BSA4 534 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 C1QTNF7Q9BXJ2 289 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 ITM2CQ9NQX7 267 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 RAD18Q9NS91 495 aa10.38□□□□□ -0.75
VCL-201ENST00000211998 CENPBD1B2RD01 187 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 PRKAR2AP13861 404 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 CDH4P55283 916 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 PABPC1LQ4VXU2 614 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 RNASEH2BQ5TBB1 312 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 XKRXQ6PP77 449 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 DEFB132Q7Z7B7 95 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 COMMD2Q86X83 199 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SLITRK4Q8IW52 837 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 PM20D2Q8IYS1 436 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ASB9Q96DX5 294 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 PCDHB18PQ96TA0 734 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ABCC13Q9NSE7 274 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 NCKAP1Q9Y2A7 1128 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 BCL9O00512 1426 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 EIF2S3P41091 472 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF143P52747 638 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 AP3S2P59780 193 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CREMQ03060 361 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SMARCB1Q12824 385 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ANKRD22Q5VYY1 191 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 FBXO42Q6P3S6 717 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 HAGHLQ6PII5 290 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 FAM220AQ7Z4H9 259 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZFP28Q8NHY6 868 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SLC2A14Q8TDB8 520 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 IPCEF1Q8WWN9 437 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 PIGKQ92643 395 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CEP295NLQ96MC4 621 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 FAM126AQ9BYI3 521 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 TTYH3Q9C0H2 523 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TMEM39AQ9NV64 488 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TAS2R7Q9NYW3 318 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SNX6Q9UNH7 406 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 METTL21EPA6NDL7 271 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 LRRC14BA6NHZ5 514 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 LRATO95237 230 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CHRM5P08912 532 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 CCNYL3P0C7X3 344 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 GNAZP19086 355 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 NFKB1P19838 968 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 FECHP22830 423 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TCEA1P23193 301 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 CD97P48960 835 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 HNMTP50135 292 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CASP7P55210 303 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SKP1P63208 163 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 DAG1Q14118 895 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF404Q494X3 552 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZYG11AQ6WRX3 759 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TRMT11Q7Z4G4 463 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 GLT6D1Q7Z4J2 308 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms