RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TWSG1Q9GZX9 223 aa14.84□□□□□ -0.03
SYNE2-228ENST00000639659 SIDT1Q9NXL6 827 aaKnown RBP14.84□□□□□ -0.03
SYNE2-228ENST00000639659 VPS18Q9P253 973 aa14.84□□□□□ -0.03
SYNE2-228ENST00000639659 VPS4AQ9UN37 437 aa14.84□□□□□ -0.03
SYNE2-228ENST00000639659 USP9YO00507 2555 aaPredicted RBP14.84□□□□□ -0.03
SYNE2-228ENST00000639659 KIR2DS5A0A0G2JLQ3 304 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 A0A0G2JNG1 304 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 PIPSLA2A3N6 862 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 LRRC53A6NM62 1247 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 TTLL8A6PVC2 850 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 FADS2P1A8MWK0 482 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 KIR2DS3K7RE56 304 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 GRID2O43424 1007 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 MFSD11O43934 449 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 DNAJB5O75953 348 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 NDUFA10O95299 355 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 RARAP10276 462 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 GNLYP22749 145 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 LEPRP48357 1165 aaKnown RBP14.83□□□□□ -0.04
SYNE2-228ENST00000639659 MYL5Q02045 173 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 KIR2DS5Q14953 304 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 INSCQ1MX18 579 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 TDRD12Q587J7 1177 aaKnown RBP14.83□□□□□ -0.04
SYNE2-228ENST00000639659 TXNRD3NBQ6F5E7 133 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 IRF2BP2Q7Z5L9 587 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 LRRN4Q8WUT4 740 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 C9orf72Q96LT7 481 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 HAUS4Q9H6D7 363 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 PCDH18Q9HCL0 1135 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 KLC4Q9NSK0 619 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 RCOR3Q9P2K3 495 aaPredicted RBP14.83□□□□□ -0.04
SYNE2-228ENST00000639659 TLK1Q9UKI8 766 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 DNAJC16Q9Y2G8 782 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 PPIL1Q9Y3C6 166 aa14.83□□□□□ -0.04
SYNE2-228ENST00000639659 MN1Q10571 1320 aaPredicted RBP14.83□□□□□ -0.04
SYNE2-228ENST00000639659 SPTAN1Q13813 2472 aaKnown RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 LILRA5A6NI73 299 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 PDZK1P1A8MUH7 402 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 FZD6O60353 706 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 MTA2O94776 668 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 UBXN7O94888 489 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 VIPP01282 170 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 ATP1A3P13637 1013 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 CA4P22748 312 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 MMRN1Q13201 1228 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 MAP7Q14244 749 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 FHL5Q5TD97 284 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 TCTN3Q6NUS6 607 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 BTBD6Q96KE9 485 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 PLEKHG4BQ96PX9 1271 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 SYT11Q9BT88 431 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 TDRD1Q9BXT4 1180 aaKnown RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 OR2AG1Q9H205 316 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 EPB41L1Q9H4G0 881 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 FAM83DQ9H4H8 585 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 PCDH9Q9HC56 1237 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 MRPL47Q9HD33 250 aaKnown RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 RBM22Q9NW64 420 aaKnown RBP eCLIP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 PKD2L2Q9NZM6 624 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 CHMP5Q9NZZ3 219 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 PLEKHB1Q9UF11 243 aaPredicted RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 DNPEPQ9ULA0 475 aa14.82□□□□□ -0.04
SYNE2-228ENST00000639659 CNOT6Q9ULM6 557 aaKnown RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 TNRC6AQ8NDV7 1962 aaKnown RBP14.82□□□□□ -0.04
SYNE2-228ENST00000639659 A6NCN8 305 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 OR5K4A6NMS3 321 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 CCNYL3P0C7X3 344 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF8P17098 575 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-228ENST00000639659 PCK1P35558 622 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 CD97P48960 835 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF165P49910 485 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 DNASE1L3Q13609 305 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 BOLA3Q53S33 107 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF569Q5MCW4 686 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 CCDC122Q5T0U0 273 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 IRGCQ6NXR0 463 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 SASS6Q6UVJ0 657 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 FAM92BQ6ZTR7 304 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ZNF571Q7Z3V5 609 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-228ENST00000639659 TTC30BQ8N4P2 665 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 AVL9Q8NBF6 648 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 CCHCR1Q8TD31 782 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 SPATA16Q9BXB7 569 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 RMI1Q9H9A7 625 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 OGFRQ9NZT2 677 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 SCHIP1Q9P0W5 487 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-228ENST00000639659 MAP10Q9P2G4 905 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ATXN10Q9UBB4 475 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 TRIM10Q9UDY6 481 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 KCND3Q9UK17 655 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 SLC30A1Q9Y6M5 507 aa14.81□□□□□ -0.04
SYNE2-228ENST00000639659 USP9XQ93008 2570 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-228ENST00000639659 ICE1Q9Y2F5 2266 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 SPTBN1Q01082 2364 aaKnown RBP14.8□□□□□ -0.04
SYNE2-228ENST00000639659 A1L4Q6 167 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 KIF1CO43896 1103 aaKnown RBP14.8□□□□□ -0.04
SYNE2-228ENST00000639659 NUAK1O60285 661 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 PDGFAP04085 211 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 ANKRD34CP0C6C1 535 aa14.8□□□□□ -0.04
SYNE2-228ENST00000639659 SPINT3P49223 89 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms