RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 SPO11Q9Y5K1 396 aa13.68□□□□□ -0.22
PNKP-228ENST00000637325 TRBV23OR9-2A0A075B6M9 112 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 MIF4GDA9UHW6 222 aaKnown RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 AURKAO14965 403 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 KCNN4O15554 427 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 GRID2O43424 1007 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 DNAJC6O75061 913 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 ZNF189O75820 626 aaPredicted RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 DXOO77932 396 aaKnown RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 FTCDO95954 541 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 ACP5P13686 325 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 BPIP17213 487 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 HLA-DPA1P20036 260 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 PCBP4P57723 403 aaKnown RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 OR1D5P58170 312 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 ERVPABLB-1P60509 514 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 CCDC173Q0VFZ6 552 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 SLC1A5Q15758 541 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 MAP9Q49MG5 647 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 B3GNT8Q7Z7M8 397 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 C17orf82Q86X59 251 aaPredicted RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 PHYKPLQ8IUZ5 450 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 NAGSQ8N159 534 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 FBXO39Q8N4B4 442 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 TTC13Q8NBP0 860 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 PATE1Q8WXA2 126 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 GLYATL1Q969I3 302 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 HERPUD2Q9BSE4 406 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 OR2AG1Q9H205 316 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 GBA3Q9H227 469 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 CARD9Q9H257 536 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 TRIM39Q9HCM9 518 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 ATXN10Q9UBB4 475 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 NFKBIL1Q9UBC1 381 aaPredicted RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 RALYQ9UKM9 306 aaKnown RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 PACSIN2Q9UNF0 486 aaPredicted RBP13.67□□□□□ -0.22
PNKP-228ENST00000637325 PCDHGA8Q9Y5G5 932 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 ST14Q9Y5Y6 855 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 PIKFYVEQ9Y2I7 2098 aa13.67□□□□□ -0.22
PNKP-228ENST00000637325 A0A0U1RQJ8 604 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 NUAK1O60285 661 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 SNX2O60749 519 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 TNFSF15O95150 251 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 SLC2A4P14672 509 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZNF8P17098 575 aaPredicted RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 HMGCLP35914 325 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 CHRNA4P43681 627 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 GPR3P46089 330 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 PDX1P52945 283 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 B4GALNT1Q00973 533 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 EIF3IQ13347 325 aaKnown RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 ANKRD20A2Q5SQ80 823 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZNF648Q5T619 568 aaPredicted RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 PHF19Q5T6S3 580 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ANKRD20A1Q5TYW2 823 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ANKRD20A3Q5VUR7 823 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZDHHC20Q5W0Z9 365 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 RAB11FIP2Q7L804 512 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 GLT6D1Q7Z4J2 308 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 PIM3Q86V86 326 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 RNF10Q8N5U6 811 aaKnown RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZNF248Q8NDW4 579 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 GDAP1Q8TB36 358 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 LRRC45Q96CN5 670 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 LIN37Q96GY3 246 aaPredicted RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 NAF1Q96HR8 494 aaKnown RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 SLC46A1Q96NT5 459 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 PLEKHG4BQ96PX9 1271 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 FICDQ9BVA6 458 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 TSGA10Q9BZW7 698 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZMYND15Q9H091 742 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 STN1Q9H668 368 aaKnown RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 KCNK6Q9Y257 313 aa13.66□□□□□ -0.22
PNKP-228ENST00000637325 AAR2Q9Y312 384 aaKnown RBP13.66□□□□□ -0.22
PNKP-228ENST00000637325 ZNF106Q9H2Y7 1883 aaKnown RBP13.65□□□□□ -0.22
PNKP-228ENST00000637325 CACNA1GO43497 2377 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 GPR89AB7ZAQ6 455 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 AGRPO00253 132 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 B4GAT1O43505 415 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 CPNE6O95741 557 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 AGTP01019 485 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 GPR89BP0CG08 455 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 ITPKBP27987 946 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 PSMB4P28070 264 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 CCKBRP32239 447 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 SPAM1P38567 509 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 GTF2H3Q13889 308 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 CRTC3Q6UUV7 619 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 USP53Q70EK8 1073 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 ZNF438Q7Z4V0 828 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 ADGRG6Q86SQ4 1221 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 PDZD3Q86UT5 571 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 TTC30BQ8N4P2 665 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 CCDC110Q8TBZ0 833 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 AHCYL2Q96HN2 611 aaKnown RBP13.65□□□□□ -0.22
PNKP-228ENST00000637325 SPATA13Q96N96 652 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 PPP1R2P1Q96PQ5 205 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 SLC38A3Q99624 504 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 OSGEPL1Q9H4B0 414 aa13.65□□□□□ -0.22
PNKP-228ENST00000637325 ASCL3Q9NQ33 180 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms