RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SLC39A1Q9NY26 324 aa11.8□□□□□ -0.52
UPF3B-204ENST00000619445 DDX56Q9NY93 547 aaKnown RBP11.8□□□□□ -0.52
UPF3B-204ENST00000619445 ST14Q9Y5Y6 855 aa11.8□□□□□ -0.52
UPF3B-204ENST00000619445 LILRA5A6NI73 299 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MTSS1O43312 755 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 GRID2O43424 1007 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 NUAK1O60285 661 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MTA2O94776 668 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MAP3K6O95382 1288 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 NR2C2P49116 596 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TAS2R40P59535 323 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 NIPAL4Q0D2K0 466 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MESDQ14696 234 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PTPRRQ15256 657 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ZDHHC20Q5W0Z9 365 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC9A4Q6AI14 798 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CYB5D1Q6P9G0 228 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 RFLNAQ6ZTI6 216 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TRIM74Q86UV6 250 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 FAM129CQ86XR2 697 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PLXDC1Q8IUK5 500 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PTCD2Q8WV60 388 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 NKD1Q969G9 470 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 KIAA1143Q96AT1 154 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 IMP4Q96G21 291 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CCDC42Q96M95 316 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 AGAP2Q99490 1192 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SEMA4CQ9C0C4 833 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC25A51Q9H1U9 297 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TRIM39Q9HCM9 518 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CNOT6Q9ULM6 557 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 HEY1Q9Y5J3 304 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ZNF891A8MT65 544 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 KCNK1O00180 336 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC28A2O43868 658 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 VEGFDO43915 354 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PPFIA2O75334 1257 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC25A14O95258 325 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ATP1A1P05023 1023 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 VCLP18206 1134 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MAP4P27816 1152 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CSF2RBP32927 897 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 MC1RQ01726 317 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CDK18Q07002 472 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 AP1B1Q10567 949 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC10A2Q12908 348 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ASTE1Q2TB18 679 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SKOR2Q2VWA4 1001 aaPredicted RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 NKAIN2Q5VXU1 208 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 ARHGAP22Q7Z5H3 698 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 VASH2Q86V25 355 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 RBM12BQ8IXT5 1001 aaKnown RBP11.79□□□□□ -0.52
UPF3B-204ENST00000619445 CACNA2D3Q8IZS8 1091 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TRAM1L1Q8N609 369 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PLD5Q8N7P1 536 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SLC35G2Q8TBE7 412 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 RAPGEF5Q92565 580 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 EXTL1Q92935 676 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 SPATA16Q9BXB7 569 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TRABDQ9H4I3 376 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 FBXO8Q9NRD0 319 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 STARD5Q9NSY2 213 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TBC1D29Q9UFV1 150 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 TUBD1Q9UJT1 453 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 INTUQ9ULD6 942 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 PLEKHM1Q9Y4G2 1056 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 B3GALT1Q9Y5Z6 326 aa11.79□□□□□ -0.52
UPF3B-204ENST00000619445 A6NCN8 305 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 EFCAB7A8K855 629 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 FADS2P1A8MWK0 482 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 KMOO15229 486 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 TOX3O15405 576 aaPredicted RBP11.78□□□□□ -0.52
UPF3B-204ENST00000619445 KCNJ13O60928 360 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 MMP2P08253 660 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 ANKRD34CP0C6C1 535 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 ACP5P13686 325 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 UGT1A3P35503 534 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 MC2RQ01718 297 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 KCNC4Q03721 635 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 TFDP2Q14188 446 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 IHHQ14623 411 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 LINC00303Q3SY05 128 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 BORAQ6PGQ7 559 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 TRIM48Q8IWZ4 208 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 RHOT1Q8IXI2 618 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 NLGN4XQ8N0W4 816 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 CNTD1Q8N815 330 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 EXD3Q8N9H8 876 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 NLGN4YQ8NFZ3 816 aaPredicted RBP11.78□□□□□ -0.52
UPF3B-204ENST00000619445 DTX3LQ8TDB6 740 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 NCSTNQ92542 709 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 GLYATL1Q969I3 302 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 OLFM3Q96PB7 478 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 PLEKHG4BQ96PX9 1271 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 WDR24Q96S15 920 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 TIMM29Q9BSF4 260 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 GPR63Q9BZJ6 419 aa11.78□□□□□ -0.52
UPF3B-204ENST00000619445 CLMPQ9H6B4 373 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms