RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 FOXP3Q9BZS1 431 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 TRIM39Q9HCM9 518 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.27□□□□□ -0.453e-6■■□□□ 11.9
SS18-225ENST00000585121 NFKBIL1Q9UBC1 381 aaPredicted RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 RALYQ9UKM9 306 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 REXO2Q9Y3B8 237 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 PLEKHM1Q9Y4G2 1056 aa12.27□□□□□ -0.45
SS18-225ENST00000585121 OAS3Q9Y6K5 1087 aaKnown RBP12.27□□□□□ -0.45
SS18-225ENST00000585121 LOC285095A0A1B0GVY8 99 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 MIF4GDA9UHW6 222 aaKnown RBP12.26□□□□□ -0.45
SS18-225ENST00000585121 GPR89AB7ZAQ6 455 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 F5H423 210 aaPredicted RBP12.26□□□□□ -0.45
SS18-225ENST00000585121 GRID2O43424 1007 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 DNAJC6O75061 913 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 CPNE6O95741 557 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 JMJD7P0C870 316 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 GPR89BP0CG08 455 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 BPIP17213 487 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ITPKBP27987 946 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 RBL1P28749 1068 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 PDX1P52945 283 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 OR1D5P58170 312 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 EIF3EP60228 445 aaKnown RBP12.26□□□□□ -0.45
SS18-225ENST00000585121 PHF19Q5T6S3 580 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 KDELC1Q6UW63 502 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ZNF438Q7Z4V0 828 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 NAGSQ8N159 534 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 GPR26Q8NDV2 337 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ACTL9Q8TC94 416 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 KCNE4Q8WWG9 221 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 GLYATL1Q969I3 302 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 EID2BQ96D98 161 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 PPP1R2P1Q96PQ5 205 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 PLEKHG4BQ96PX9 1271 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 HERPUD2Q9BSE4 406 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 DPH1Q9BZG8 443 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ZMYND15Q9H091 742 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 OR2AG1Q9H205 316 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ASCL3Q9NQ33 180 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ATXN10Q9UBB4 475 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 ATXN7L1Q9ULK2 861 aaPredicted RBP12.26□□□□□ -0.45
SS18-225ENST00000585121 PKP3Q9Y446 797 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 PRKAB1Q9Y478 270 aa12.26□□□□□ -0.45
SS18-225ENST00000585121 LRP4O75096 1905 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 GRID2IPA4D2P6 1211 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 CASC3O15234 703 aaKnown RBP12.25□□□□□ -0.45
SS18-225ENST00000585121 B4GAT1O43505 415 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 NUAK1O60285 661 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 ITGA2BP08514 1039 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 RBP3P10745 1247 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 ACP5P13686 325 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 HMGCLP35914 325 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 UCNP55089 124 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 GTF2H3Q13889 308 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 NR1D2Q14995 579 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 SLC1A5Q15758 541 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 SIRPB2Q5JXA9 342 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 GLT6D1Q7Z4J2 308 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 B3GNT8Q7Z7M8 397 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 JAMLQ86YT9 394 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 SPACA3Q8IXA5 215 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 LRRC57Q8N9N7 239 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 AVL9Q8NBF6 648 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 TTC13Q8NBP0 860 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 GDAP1Q8TB36 358 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 BLOC1S5Q8TDH9 187 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 PATE1Q8WXA2 126 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 SH3KBP1Q96B97 665 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 AHCYL2Q96HN2 611 aaKnown RBP12.25□□□□□ -0.45
SS18-225ENST00000585121 OXNAD1Q96HP4 312 aaPredicted RBP12.25□□□□□ -0.45
SS18-225ENST00000585121 MRGPRX2Q96LB1 330 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 TTC25Q96NG3 672 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 SLC38A3Q99624 504 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 CMKLR1Q99788 373 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 DPYSL5Q9BPU6 564 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 GBA3Q9H227 469 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 BPIFA1Q9NP55 256 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 KCNK4Q9NYG8 393 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.25□□□□□ -0.45
SS18-225ENST00000585121 KCNK6Q9Y257 313 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 AAR2Q9Y312 384 aaKnown RBP12.25□□□□□ -0.45
SS18-225ENST00000585121 SPO11Q9Y5K1 396 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 ST14Q9Y5Y6 855 aa12.25□□□□□ -0.45
SS18-225ENST00000585121 ITPR1Q14643 2758 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 TRBV23OR9-2A0A075B6M9 112 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 A0A1W2PNU3 283 aaPredicted RBP12.24□□□□□ -0.45
SS18-225ENST00000585121 OR5K4A6NMS3 321 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 KMOO15229 486 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 PPM1DO15297 605 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 KCNN4O15554 427 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 VEGFDO43915 354 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 SNX2O60749 519 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 PPFIA2O75334 1257 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 PYGMP11217 842 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 ZNF8P17098 575 aaPredicted RBP12.24□□□□□ -0.45
SS18-225ENST00000585121 UGT1A5P35504 534 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 GSDMDP57764 484 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 GPLD1P80108 840 aa12.24□□□□□ -0.45
SS18-225ENST00000585121 ZFP36L1Q07352 338 aaKnown RBP12.24□□□□□ -0.45
SS18-225ENST00000585121 USP53Q70EK8 1073 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms