RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 MYOFQ9NZM1 2061 aa13.95□□□□□ -0.18
VPS33B-208ENST00000574755 BNIP3LO60238 219 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 FKBP6O75344 327 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 TSPAN12O95859 305 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 ENO3P13929 434 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 ANPEPP15144 967 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CD9P21926 228 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SERPINA4P29622 427 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 GCKP35557 465 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CSNK1DP48730 415 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 STK19P49842 368 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 UGT3A1Q6NUS8 523 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CERS6Q6ZMG9 384 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CPNE9Q8IYJ1 553 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 OR2AP1Q8NGE2 309 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 TTC1Q99614 292 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 NMRK1Q9NWW6 199 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 PRPF19Q9UMS4 504 aaKnown RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 LRRC42Q9Y546 428 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 DNAJC15Q9Y5T4 150 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 MTCL1Q9Y4B5 1905 aaKnown RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 A8MX80 341 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 PRMT5O14744 637 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 NVLO15381 856 aaKnown RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 ZNF821O75541 412 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CLDN7O95471 211 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 PFKLP17858 780 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 HLA-FP30511 346 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 HNF1BP35680 557 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CTSOP43234 321 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CLCQ05315 142 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SQLEQ14534 574 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 PITRM1Q5JRX3 1037 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CYHR1Q6ZMK1 362 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 GK5Q6ZS86 529 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SLC26A7Q8TE54 656 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SERPINI1Q99574 410 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 P2RY12Q9H244 342 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 ASB8Q9H765 288 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SEMA4BQ9NPR2 832 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 NDE1Q9NXR1 346 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 CXXC1Q9P0U4 656 aaPredicted RBP13.94□□□□□ -0.18
VPS33B-208ENST00000574755 SCN8AQ9UQD0 1980 aa13.94□□□□□ -0.18
VPS33B-208ENST00000574755 AZIN1O14977 448 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 BAG2O95816 211 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 FGF4P08620 206 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 HSPA1AP0DMV8 641 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 HSPA1BP0DMV9 641 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 SRCP12931 536 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 FOXA1P55317 472 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 SNRPD1P62314 119 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 LCP2Q13094 533 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 FASTKQ14296 549 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 UGT3A2Q3SY77 523 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 ANKS6Q68DC2 871 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 BNC2Q6ZN30 1099 aaPredicted RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 LARP4Q71RC2 724 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PPFIBP2Q8ND30 876 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 HIPK4Q8NE63 616 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 TWIST2Q8WVJ9 160 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 DNAJC9Q8WXX5 260 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 JADE3Q92613 823 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 TCEAL4Q96EI5 215 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 NAF1Q96HR8 494 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 C3orf30Q96M34 536 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 NPAS2Q99743 824 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CLPBQ9H078 707 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CCDC167Q9P0B6 97 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PACSIN3Q9UKS6 424 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PCDHB1Q9Y5F3 818 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 IRAK3Q9Y616 596 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CAPN8A6NHC0 703 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 GOLGA8CPA6NN73 597 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PSMD12O00232 456 aaPredicted RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CFLARO15519 480 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 SNX2O60749 519 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 RFPL2O75678 378 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 ZNF7P17097 686 aaPredicted RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CTNNB1P35222 781 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CLCN7P51798 805 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 NFATC2Q13469 925 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CCNIQ14094 377 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PTRHD1Q6GMV3 140 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 AAGABQ6PD74 315 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 SERPINA9Q86WD7 417 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PGAM4Q8N0Y7 254 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 MRPL43Q8N983 215 aaKnown RBP13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PYDC1Q8WXC3 89 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 KCNA7Q96RP8 456 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 CDRT15Q96T59 188 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 WDR41Q9HAD4 459 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 APPL1Q9UKG1 709 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 PPM1HQ9ULR3 514 aa13.93□□□□□ -0.18
VPS33B-208ENST00000574755 ZNF106Q9H2Y7 1883 aaKnown RBP13.92□□□□□ -0.18
VPS33B-208ENST00000574755 PDE4DIPQ5VU43 2346 aa13.92□□□□□ -0.18
VPS33B-208ENST00000574755 NEDD8-MDP1E9PL57 170 aa13.92□□□□□ -0.18
VPS33B-208ENST00000574755 STX16-NPEPL1H3BU86 382 aa13.92□□□□□ -0.18
VPS33B-208ENST00000574755 GAPDHSO14556 408 aaPredicted RBP13.92□□□□□ -0.18
VPS33B-208ENST00000574755 STX16O14662 325 aa13.92□□□□□ -0.18
VPS33B-208ENST00000574755 ITGALP20701 1170 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms