RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IPMKQ8NFU5 416 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SPATA22Q8NHS9 363 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 MDM1Q8TC05 714 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ACTL9Q8TC94 416 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 GRAMD1AQ96CP6 724 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 HIC2Q96JB3 615 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 PPP1R2P1Q96PQ5 205 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 OR2M4Q96R27 311 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 FCRL5Q96RD9 977 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 CCDC3Q9BQI4 270 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ZSCAN5AQ9BUG6 496 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SPATA16Q9BXB7 569 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 FRMD8Q9BZ67 464 aaPredicted RBP8.05□□□□□ -1.12
VPS53-214ENST00000572607 NRSN2Q9GZP1 204 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 TMEM168Q9H0V1 697 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 MAGEE1Q9HCI5 957 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 UBP1Q9NZI7 540 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 HACD3Q9P035 362 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SUFUQ9UMX1 484 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 SHOC2Q9UQ13 582 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 ZNF711Q9Y462 761 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 U3KQA8 63 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 MGAQ8IWI9 3026 aa8.05□□□□□ -1.12
VPS53-214ENST00000572607 A0A0U1RQS6 177 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 F5H423 210 aaPredicted RBP8.04□□□□□ -1.12
VPS53-214ENST00000572607 TMX2-CTNND1H3BSU7 103 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 KCNN4O15554 427 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ARHGAP6O43182 974 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 C1QL1O75973 258 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ANXA9O76027 345 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 EPOP01588 193 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 FGF1P05230 155 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 PIRTP0C851 137 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 RBP3P10745 1247 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 PYGMP11217 842 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 HLA-DPA1P20036 260 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 RBL1P28749 1068 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ACTN2P35609 894 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ACTR1BP42025 376 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 POLD2P49005 469 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 GEMP55040 296 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 WNT3AP56704 352 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ACTR1AP61163 376 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 GTF2H3Q13889 308 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 LRP8Q14114 963 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 IHHQ14623 411 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 C14orf28Q4W4Y0 310 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 PERM1Q5SV97 790 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 SEL1L2Q5TEA6 688 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 CDCP2Q5VXM1 449 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ZDHHC20Q5W0Z9 365 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 PDPK2PQ6A1A2 396 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 SLC30A9Q6PML9 568 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 RFLNAQ6ZTI6 216 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 VASH1Q7L8A9 365 aaPredicted RBP8.04□□□□□ -1.12
VPS53-214ENST00000572607 TRIM74Q86UV6 250 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 PHYKPLQ8IUZ5 450 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 LSMEM2Q8N112 164 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 SLC25A41Q8N5S1 370 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 TRAM1L1Q8N609 369 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 LRRC57Q8N9N7 239 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ZDHHC1Q8WTX9 485 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 UBE2Q2Q8WVN8 375 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 CCDC74AQ96AQ1 378 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ALS2CR12Q96Q35 445 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 GFM1Q96RP9 751 aaKnown RBP8.04□□□□□ -1.12
VPS53-214ENST00000572607 TRIB3Q96RU7 358 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 AGAP2Q99490 1192 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 ZMYND15Q9H091 742 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 TRABDQ9H4I3 376 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 STN1Q9H668 368 aaKnown RBP8.04□□□□□ -1.12
VPS53-214ENST00000572607 RMI1Q9H9A7 625 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 TAAR2Q9P1P5 351 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 VPS18Q9P253 973 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 DKK4Q9UBT3 224 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 RAXQ9Y2V3 346 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 TMEM98Q9Y2Y6 226 aa8.04□□□□□ -1.12
VPS53-214ENST00000572607 AAR2Q9Y312 384 aaKnown RBP8.04□□□□□ -1.12
VPS53-214ENST00000572607 MYLKQ15746 1914 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 PTPRQQ9UMZ3 2332 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 LOC285095A0A1B0GVY8 99 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 RHPN2P1A8MT19 583 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 NUDT21O43809 227 aaKnown RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 USP12O75317 370 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 FTCDO95954 541 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 SOD1P00441 154 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 RPLP0P05388 317 aaKnown RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 CCDC175P0C221 793 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 SLC2A4P14672 509 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 PNLIPP16233 465 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GLB1P16278 677 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 CD68P34810 354 aaPredicted RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 SPAM1P38567 509 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ADCY8P40145 1251 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 PPM1FP49593 454 aaPredicted RBP8.03□□□□□ -1.12
VPS53-214ENST00000572607 DCDC1P59894 354 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 GABREP78334 506 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 CTBSQ01459 385 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 RTP5Q14D33 572 aa8.03□□□□□ -1.12
VPS53-214ENST00000572607 ISXQ2M1V0 245 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms