RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RPS6KA1Q15418 735 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 ISXQ2M1V0 245 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 C14orf28Q4W4Y0 310 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 CERCAMQ5T4B2 595 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 C17orf82Q86X59 251 aaPredicted RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 SLC13A5Q86YT5 568 aaPredicted RBP14.89□□□□□ -0.03
VPS39-210ENST00000568357 GALNT13Q8IUC8 556 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 ZDHHC1Q8WTX9 485 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 UBE2Q2Q8WVN8 375 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 ATG4AQ8WYN0 398 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 GLYATL1Q969I3 302 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 TMEM121Q9BTD3 319 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 ZSCAN5AQ9BUG6 496 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 NRSN2Q9GZP1 204 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 TRIM39Q9HCM9 518 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 IL26Q9NPH9 171 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 ATXN10Q9UBB4 475 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 DKK4Q9UBT3 224 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 PPP2R2CQ9Y2T4 447 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 RNF215Q9Y6U7 377 aa14.89□□□□□ -0.03
VPS39-210ENST00000568357 A0A1W2PQM1 296 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 NTN3O00634 580 aaPredicted RBP14.88□□□□□ -0.03
VPS39-210ENST00000568357 NUAK1O60285 661 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 USP12O75317 370 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 METTL18O95568 372 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ECEL1O95672 775 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 GLB1P16278 677 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ZNF8P17098 575 aaPredicted RBP14.88□□□□□ -0.03
VPS39-210ENST00000568357 CA5AP35218 305 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ACTR1BP42025 376 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 MAZP56270 477 aaKnown RBP14.88□□□□□ -0.03
VPS39-210ENST00000568357 ACTR1AP61163 376 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 RTP5Q14D33 572 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ATP13A5Q4VNC0 1218 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ZNF569Q5MCW4 686 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 DENND5AQ6IQ26 1287 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 GLT6D1Q7Z4J2 308 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 KLHDC8BQ8IXV7 354 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 NAGSQ8N159 534 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ARL14Q8N4G2 192 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 Q8N9G6 341 aaPredicted RBP14.88□□□□□ -0.03
VPS39-210ENST00000568357 OR6C4Q8NGE1 309 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 PATE1Q8WXA2 126 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 SLC39A7Q92504 469 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 PLEKHG4BQ96PX9 1271 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 DEPDC7Q96QD5 511 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 OR2AG1Q9H205 316 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 HACD3Q9P035 362 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 LRIT1Q9P2V4 623 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 APPL1Q9UKG1 709 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 KCTD3Q9Y597 815 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 ARL5AQ9Y689 179 aa14.88□□□□□ -0.03
VPS39-210ENST00000568357 GOLGA4Q13439 2230 aaKnown RBP14.87□□□□□ -0.03
VPS39-210ENST00000568357 GOLGA6L3A6NEY3 463 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 GRID2O43424 1007 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A9O60656 530 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 MTX2O75431 263 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 EML2O95834 649 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A6P19224 532 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A1P22309 533 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A4P22310 534 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A3P35503 534 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A5P35504 534 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 PDX1P52945 283 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 LRP8Q14114 963 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 CHRNA6Q15825 494 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 PARP6Q2NL67 630 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 KHDC1Q4VXA5 237 aaKnown RBP14.87□□□□□ -0.03
VPS39-210ENST00000568357 SEL1L2Q5TEA6 688 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 KCTD11Q693B1 232 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 PDPK2PQ6A1A2 396 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 RBM44Q6ZP01 1051 aaKnown RBP14.87□□□□□ -0.03
VPS39-210ENST00000568357 ARHGEF18Q6ZSZ5 1173 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 CHST15Q7LFX5 561 aaPredicted RBP14.87□□□□□ -0.03
VPS39-210ENST00000568357 ADGRG6Q86SQ4 1221 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 C1orf54Q8WWF1 131 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 TLR10Q9BXR5 811 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 CARD9Q9H257 536 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 LRRN3Q9H3W5 708 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 RMI1Q9H9A7 625 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A7Q9HAW7 530 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A10Q9HAW8 530 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 UGT1A8Q9HAW9 530 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 AK5Q9Y6K8 562 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 URB1O60287 2271 aaKnown RBP14.87□□□□□ -0.03
VPS39-210ENST00000568357 NAV2Q8IVL1 2488 aa14.87□□□□□ -0.03
VPS39-210ENST00000568357 ASXL3Q9C0F0 2248 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 TRBV23OR9-2A0A075B6M9 112 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 A0A087WV48 116 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 A0A1W2PNU3 283 aaPredicted RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 GAPDHSO14556 408 aaPredicted RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 CHUKO15111 745 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 PPM1DO15297 605 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 GPR39O43194 453 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 B4GAT1O43505 415 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 LIASO43766 372 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 NUDT21O43809 227 aaKnown RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 TCEA3O75764 348 aa14.86□□□□□ -0.03
VPS39-210ENST00000568357 ZNF189O75820 626 aaPredicted RBP14.86□□□□□ -0.03
VPS39-210ENST00000568357 RPLP0P05388 317 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms