RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 MAEAQ7L5Y9 396 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ADGRG6Q86SQ4 1221 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LRRTM3Q86VH5 581 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LONP2Q86WA8 852 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 WDR49Q8IV35 697 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MFN1Q8IWA4 741 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LMNTD2Q8IXW0 634 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 THNSL1Q8IYQ7 743 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZBED8Q8IZ13 594 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SCYL3Q8IZE3 742 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 AHI1Q8N157 1196 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 C4orf33Q8N1A6 199 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ARFGAP1Q8N6T3 406 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TMEM35BQ8NCS4 154 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.52□□□□□ -2.01
SPG11-223ENST00000560858 RFWD2Q8NHY2 731 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TTC8Q8TAM2 541 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ACTL9Q8TC94 416 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TSPEARQ8WU66 669 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZFAND2BQ8WV99 257 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SLC44A1Q8WWI5 657 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DNAJC9Q8WXX5 260 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 NCSTNQ92542 709 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF75CPQ92670 426 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 USP6NLQ92738 828 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF622Q969S3 477 aaKnown RBP eCLIP2.52□□□□□ -2.01
SPG11-223ENST00000560858 AZIN2Q96A70 460 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 COQ8BQ96D53 544 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SPDL1Q96EA4 605 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 BICD1Q96G01 975 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CDHR1Q96JP9 859 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CEP170P1Q96L14 293 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 C7orf26Q96N11 449 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MCEEQ96PE7 176 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TRAPPC9Q96Q05 1148 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TAAR1Q96RJ0 339 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 NUDCD1Q96RS6 583 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 FNBP1Q96RU3 617 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 FAM118BQ9BPY3 351 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 FAM213AQ9BRX8 229 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TUBB6Q9BUF5 446 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TSSK1BQ9BXA7 367 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TMEM120AQ9BXJ8 343 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 HEMGNQ9BXL5 484 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CADM1Q9BY67 442 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 ACE2Q9BYF1 805 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 FRMD8Q9BZ67 464 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 TMX4Q9H1E5 349 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 PORCNQ9H237 461 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LHX5Q9H2C1 402 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 FAM124BQ9H5Z6 455 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 STN1Q9H668 368 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 DENND2DQ9H6A0 471 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MANSC1Q9H8J5 431 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 VPS37BQ9H9H4 285 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 KCNK13Q9HB14 408 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PLAC1Q9HBJ0 212 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 POPDC2Q9HBU9 364 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PDGFCQ9NRA1 345 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RNF146Q9NTX7 359 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 POT1Q9NUX5 634 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ARL8BQ9NVJ2 186 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.52□□□□□ -2.01
SPG11-223ENST00000560858 RBAKQ9NYW8 714 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 VSX1Q9NZR4 365 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 SLC17A7Q9P2U7 560 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 STX18Q9P2W9 335 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 DKK3Q9UBP4 350 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SLC9A2Q9UBY0 812 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF212Q9UDV6 495 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DNAJB4Q9UDY4 337 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 HAO1Q9UJM8 370 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 AGO2Q9UKV8 859 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 PLA2G4CQ9UP65 541 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TEX264Q9Y6I9 313 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SF3B1O75533 1304 aaKnown RBP eCLIP2.51□□□□□ -2.01
SPG11-223ENST00000560858 IQANK1A0A1B0GTG1 560 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.51□□□□□ -2.01
SPG11-223ENST00000560858 TCRBV7S3A2A0A539 114 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 TCRBV9S1A1TA0A576 114 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 CLRN2A0PK11 232 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 CFAP69A5D8W1 941 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 DPPA5A6NC42 116 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 KLHL33A6NCF5 533 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 FAM159BA6NKW6 160 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 FAM171A2A8MVW0 826 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 KBTBD13C9JR72 458 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 F8VP50 259 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 POC1B-GALNT4F8VUJ3 575 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 F8W8V4 182 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 H0YIN7 160 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 SGK1O00141 431 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 VWA5AO00534 786 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 FCHO1O14526 889 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 CLGNO14967 610 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 MCF2LO15068 1137 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 OGTO15294 1046 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 SMAD6O43541 496 aaKnown RBP2.51□□□□□ -2.01
SPG11-223ENST00000560858 CCDC22O60826 627 aa2.51□□□□□ -2.01
SPG11-223ENST00000560858 TBX10O75333 385 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms