RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 DMC1Q14565 340 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TSNQ15631 228 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ZSCAN26Q16670 478 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TTMPQ5BVD1 217 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PRRT3Q5FWE3 981 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 HECTD2Q5U5R9 776 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CXorf57Q6NSI4 855 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PSAPL1Q6NUJ1 521 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 UGT3A1Q6NUS8 523 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NCEH1Q6PIU2 408 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 HEATR4Q86WZ0 1026 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TMC8Q8IU68 726 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GALNT13Q8IUC8 556 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SLC44A2Q8IWA5 706 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC34Q8IZ02 419 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 RBFAQ8N0V3 343 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SLC44A3Q8N4M1 653 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GPR156Q8NFN8 814 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MCOLN3Q8TDD5 553 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 STYXQ8WUJ0 223 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GFM2Q969S9 779 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CLIP3Q96DZ5 547 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PANX3Q96QZ0 392 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PKMYT1Q99640 499 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CCDC3Q9BQI4 270 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MANSC1Q9H8J5 431 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CNOT10Q9H9A5 744 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TMBIM4Q9HC24 238 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MID1IP1Q9NPA3 183 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NSMCE4AQ9NXX6 385 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PHTF1Q9UMS5 762 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 APOBEC2Q9Y235 224 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SPTAN1Q13813 2472 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SPAG17Q6Q759 2223 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MYOFQ9NZM1 2061 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 C9JVG2 144 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 FPGTO14772 594 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GLRA3O75311 464 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TPSB2P20231 275 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MDH1P40925 334 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CLCNKAP51800 687 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PRKD1Q15139 912 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TPSAB1Q15661 275 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 AP5B1Q2VPB7 878 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF789Q5FWF6 425 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 EOGTQ5NDL2 527 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ASTLQ6HA08 431 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PAQR3Q6TCH7 311 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 RIPOR1Q6ZS17 1223 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MILR1Q7Z6M3 343 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TMEM150AQ86TG1 271 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 METTL3Q86U44 580 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PHYKPLQ8IUZ5 450 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CDYL2Q8N8U2 506 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PGAP3Q96FM1 320 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SPACA7Q96KW9 195 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 FCRL3Q96P31 734 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TDRD1Q9BXT4 1180 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NUF2Q9BZD4 464 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PIF1Q9H611 641 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 KLQ9UEF7 1012 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 MUC6Q6W4X9 2439 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 LOC285556D6RIA3 1793 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GMNCA6NCL1 334 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 KRT87PA6NCN2 255 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GMNNO75496 209 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PGLSO95336 258 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ANP32DO95626 131 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 IGHA2P01877 340 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 AHSGP02765 367 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CATP04040 527 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 C6P13671 934 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PRKCHP24723 683 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 HTR7P34969 479 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GDF5P43026 501 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SERPINB4P48594 390 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CSTF1Q05048 431 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ILF3Q12906 894 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ADAM15Q13444 863 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NFATC2Q13469 925 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 NAE1Q13564 534 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 INPP5AQ14642 412 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 KCNJ11Q14654 390 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CYP1B1Q16678 543 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ATP13A5Q4VNC0 1218 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF805Q5CZA5 627 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 GRTP1Q5TC63 336 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 C6orf163Q5TEZ5 329 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 UBE2R2Q712K3 238 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 EXOC3L1Q86VI1 746 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TRIM42Q8IWZ5 723 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PGBD5Q8N414 524 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 PPFIBP2Q8ND30 876 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 SETD7Q8WTS6 366 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 CAVIN3Q969G5 261 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC39Q96DD0 335 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 IMP4Q96G21 291 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 TOE1Q96GM8 510 aaKnown RBP5.41□□□□□ -1.54
VPS13C-209ENST00000560637 C12orf66Q96MD2 445 aa5.41□□□□□ -1.54
VPS13C-209ENST00000560637 HSPA12BQ96MM6 686 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms