RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 NR6A1Q15406 480 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 SF3B4Q15427 424 aaKnown RBP eCLIP11.27□□□□□ -0.612e-7■■■□□ 18.3
LDLR-208ENST00000558518 GCNT7Q6ZNI0 430 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 THAP5Q7Z6K1 395 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 GALNT10Q86SR1 603 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 UNC93AQ86WB7 457 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 OR10A6Q8NH74 314 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 RMDN1Q96DB5 314 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 KLRG1Q96E93 195 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CCDC126Q96EE4 140 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 NANOGQ9H9S0 305 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 J3KR12 359 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 SCAMP3O14828 347 aaKnown RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 SEC24AO95486 1093 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 ZNF682O95780 498 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 HTR1BP28222 390 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CLK1P49759 484 aaKnown RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 ARSFP54793 590 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 MAPRE1Q15691 268 aaKnown RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 NOTUMQ6P988 496 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 ENPP6Q6UWR7 440 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 SLC22A9Q8IVM8 553 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 RPL3LQ92901 407 aaKnown RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 TSPAN17Q96FV3 270 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 FCRL2Q96LA5 508 aaPredicted RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 HOPXQ9BPY8 73 aaPredicted RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 RHNO1Q9BSD3 238 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 RERGLQ9H628 205 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 PALMDQ9NP74 551 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 UXTQ9UBK9 157 aaPredicted RBP11.27□□□□□ -0.61
LDLR-208ENST00000558518 PDE10AQ9Y233 779 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 CPQQ9Y646 472 aa11.27□□□□□ -0.61
LDLR-208ENST00000558518 NPEPPSL1A6NEC2 478 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 CDC7O00311 574 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 AXIN1O15169 862 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 MITFO75030 526 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 SLC22A3O75751 556 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 OR4F21O95013 312 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 CYP2C9P11712 490 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 IMPDH1P20839 514 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 DCKP27707 260 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 PIGAP37287 484 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 SERPINH1P50454 418 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 ARPP19P56211 112 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ATP6V0D1P61421 351 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 OR4D1Q15615 310 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 TRIP4Q15650 581 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 KCNJ8Q15842 424 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 PRAMEF19Q5SWL8 479 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 FAM45BPQ6NSW5 357 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 FAM117BQ6P1L5 589 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ZNF773Q6PK81 442 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 FAM45AQ8TCE6 357 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 OSCP1Q8WVF1 389 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 PPP1R14BQ96C90 147 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 AURKBQ96GD4 344 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 MAELQ96JY0 434 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 HGH1Q9BTY7 390 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 C11orf84Q9BUA3 381 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 EHD1Q9H4M9 534 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 WDR6Q9NNW5 1121 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 BPIFA1Q9NP55 256 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 AQP12BA6NM10 295 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 C16orf96A6NNT2 1141 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ACOX3O15254 700 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 NCAM2O15394 837 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 PAGE1O75459 146 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 CNPP09543 421 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 ALOX12P18054 663 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 TTKP33981 857 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 DAOAP59103 153 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 IL27RAQ6UWB1 636 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ISCA2Q86U28 154 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ANKRD46Q86W74 232 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 AQP12AQ8IXF9 295 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 PHACTR4Q8IZ21 702 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 RORBQ92753 470 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 SNX27Q96L92 541 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 SENP8Q96LD8 212 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 SPON2Q9BUD6 331 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 VRTNQ9H8Y1 702 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ARMC1Q9NVT9 282 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 GNPTGQ9UJJ9 305 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 FXYD1O00168 92 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ARVCFO00192 962 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 CYBBP04839 570 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 ABCB1P08183 1280 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 HSMCR30P0CW71 290 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 MBL2P11226 248 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 GTF2E2P29084 291 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 ARCN1P48444 511 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 HLCSP50747 726 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 POLR2JP52435 117 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 SLC10A7Q0GE19 358 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 KCNAB2Q13303 367 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 FAM98BQ52LJ0 330 aaKnown RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 COLEC12Q5KU26 742 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 KIAA0319Q5VV43 1072 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 UGT3A1Q6NUS8 523 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 CYHR1Q6ZMK1 362 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms