RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 POP5Q969H6 163 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 PKMYT1Q99640 499 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 RTP3Q9BQQ7 232 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 NOL6Q9H6R4 1146 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SP110Q9HB58 689 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 TMEM248Q9NWD8 314 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 TDRKHQ9Y2W6 561 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 GIT1Q9Y2X7 761 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 NYNRINQ9P2P1 1898 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 CROCCQ5TZA2 2017 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 FUOMA2VDF0 154 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 KLK8O60259 260 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SOAT2O75908 522 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 CLPXO76031 633 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SIX3O95343 332 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ATXN1LP0C7T5 689 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 MTHFD1P11586 935 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 EEF1DP29692 281 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 BCAP31P51572 246 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 BMXP51813 675 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ARSFP54793 590 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 NEDD8Q15843 81 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 RGS21Q2M5E4 152 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ANKDD1AQ495B1 522 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 NANOGP8Q6NSW7 305 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 DLK2Q6UY11 383 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 THAP5Q7Z6K1 395 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ANKRD23Q86SG2 305 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 CENPSQ8N2Z9 138 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 CHCHD4Q8N4Q1 142 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 EXT2Q93063 718 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 BCL7BQ9BQE9 202 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ING2Q9H160 280 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 NANOGQ9H9S0 305 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ZFYVE28Q9HCC9 887 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 RNF112Q9ULX5 631 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 CRYL1Q9Y2S2 319 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 PCDHGA11Q9Y5H2 935 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 MIA3Q5JRA6 1907 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 CFAP99D6REC4 459 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 DYNC1LI2O43237 492 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-231ENST00000557433 TREHO43280 583 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 SULT1C4O75897 302 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 CLIC3O95833 236 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 SLC4A1P02730 911 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 RAP2AP10114 183 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 THRBP10828 461 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 CHRM3P20309 590 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 TIAL1Q01085 375 aaKnown RBP eCLIP16.16■□□□□ 0.187e-9■■□□□ 13.1
SHMT2-231ENST00000557433 RAD51Q06609 339 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 BNIP3Q12983 259 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 FAM98BQ52LJ0 330 aaKnown RBP16.16■□□□□ 0.18
SHMT2-231ENST00000557433 TIGD5Q53EQ6 642 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 RABL3Q5HYI8 236 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 FRA10AC1Q70Z53 315 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 RYBPQ8N488 228 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-231ENST00000557433 CASP10Q92851 521 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 KATNAL1Q9BW62 490 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 ZYG11BQ9C0D3 744 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 AGO3Q9H9G7 860 aaKnown RBP16.16■□□□□ 0.18
SHMT2-231ENST00000557433 PRDM5Q9NQX1 630 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-231ENST00000557433 CATSPERZQ9NTU4 200 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 FAM105AQ9NUU6 356 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 GIN1Q9NXP7 522 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 TAS2R13Q9NYV9 303 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.16■□□□□ 0.185e-12■■□□□ 11.4
SHMT2-231ENST00000557433 ERGIC3Q9Y282 383 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 PTGDR2Q9Y5Y4 395 aa16.16■□□□□ 0.18
SHMT2-231ENST00000557433 ASPDHA6ND91 283 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 SUPT3HB4E1H0 165 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ARNTLO00327 626 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 SUPT3HO75486 399 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GOT2P00505 430 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 EEF1B2P24534 225 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ZFP36L2P47974 494 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 STC1P52823 247 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 DIO3P55073 304 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 DSC2Q02487 901 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 IL10RBQ08334 325 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 TRAF2Q12933 501 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 PRKG2Q13237 762 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 UPP1Q16831 310 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 XKR5Q6UX68 686 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 LDB1Q86U70 411 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 IFNEQ86WN2 208 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 KIAA2013Q8IYS2 634 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 C8orf59Q8N0T1 100 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 THEM5Q8N1Q8 247 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 TTC30BQ8N4P2 665 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 NKAPQ8N5F7 415 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ARRDC2Q8TBH0 407 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 BRSK1Q8TDC3 778 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ISG20Q96AZ6 181 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 SDCCAG3Q96C92 435 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 CDCA5Q96FF9 252 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 TBATAQ96M53 351 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GAD1Q99259 594 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 COMMD8Q9NX08 183 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 MPP6Q9NZW5 540 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 UXTQ9UBK9 157 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms