RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PDE1BQ01064 536 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 KCNJ11Q14654 390 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 PPP1R7Q15435 360 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 TPSAB1Q15661 275 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 HS1BP3Q53T59 392 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 N4BP2L1Q5TBK1 243 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-226ENST00000553011 ANKRD22Q5VYY1 191 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 ZNF534Q76KX8 674 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 TAF8Q7Z7C8 310 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 ADGRG6Q86SQ4 1221 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 GLRX5Q86SX6 157 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 SLCO6A1Q86UG4 719 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 GKN2Q86XP6 184 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 PHYKPLQ8IUZ5 450 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 DTX3LQ8TDB6 740 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 CPT1BQ92523 772 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 TRIM44Q96DX7 344 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-226ENST00000553011 APOLD1Q96LR9 279 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 VPS35Q96QK1 796 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 OR2M4Q96R27 311 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 DUSP23Q9BVJ7 150 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 TOR4AQ9NXH8 423 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 VPS18Q9P253 973 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 DOLKQ9UPQ8 538 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 PRKAB1Q9Y478 270 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 GPSM3Q9Y4H4 160 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 ST14Q9Y5Y6 855 aa13.98□□□□□ -0.17
PTCH1-226ENST00000553011 LY6G6EA0A0G2JKS1 128 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 MROH6A6NGR9 719 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 TPP1O14773 563 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 SRP72O76094 671 aaKnown RBP13.97□□□□□ -0.17
PTCH1-226ENST00000553011 TMEM63AO94886 807 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 FTH1P19P0C7X4 201 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 ZNF8P17098 575 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-226ENST00000553011 AK4P27144 223 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-226ENST00000553011 PTGIRP43119 386 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 PEX6Q13608 980 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 ITGA9Q13797 1035 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 PYCR3Q53H96 274 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 CCDC157Q569K6 752 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 NRROSQ86YC3 692 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 GALNT13Q8IUC8 556 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 GDAP1Q8TB36 358 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 ZNF398Q8TD17 642 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 GPBAR1Q8TDU6 330 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 STYXQ8WUJ0 223 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 ASB8Q9H765 288 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 TRIM39Q9HCM9 518 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 NLE1Q9NVX2 485 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-226ENST00000553011 TRNAU1APQ9NX07 287 aaKnown RBP13.97□□□□□ -0.17
PTCH1-226ENST00000553011 RNF14Q9UBS8 474 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 PCYOX1Q9UHG3 505 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 ZNHIT2Q9UHR6 403 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 APPL1Q9UKG1 709 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 U3KQA8 63 aa13.97□□□□□ -0.17
PTCH1-226ENST00000553011 CHD8Q9HCK8 2581 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 MED19A0JLT2 244 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-226ENST00000553011 HEATR9A2RTY3 570 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CCDC188H7C350 402 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 NUAK1O60285 661 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CKMT2P17540 419 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ADRA1DP25100 572 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 MC4RP32245 332 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 HADHAP40939 763 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 MAGEA6P43360 314 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ARSDP51689 593 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CRADDP78560 199 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 DAB2P98082 770 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CDK16Q00536 496 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CTBSQ01459 385 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ILF3Q12906 894 aaKnown RBP eCLIP13.96□□□□□ -0.17
PTCH1-226ENST00000553011 PTK6Q13882 451 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 C6orf132Q5T0Z8 1188 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 GPRC6AQ5T6X5 926 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ZCCHC8Q6NZY4 707 aaKnown RBP13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CRTC3Q6UUV7 619 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SFTPA2Q8IWL1 248 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SLC35F3Q8IY50 421 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SDR16C5Q8N3Y7 309 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 PNPLA1Q8N8W4 532 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 FAM181AQ8N9Y4 354 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 FAM46DQ8NEK8 389 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SLCO2A1Q92959 643 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 CDKN2AIPNLQ96HQ2 116 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ZNF778Q96MU6 729 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 RANBP9Q96S59 729 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 C19orf43Q9BQ61 176 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 BOCQ9BWV1 1114 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 GSDMCQ9BYG8 508 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 FAM96AQ9H5X1 160 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SMOXQ9NWM0 555 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SIRPGQ9P1W8 387 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 SLC2A6Q9UGQ3 507 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 ASIC3Q9UHC3 531 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 GPR34Q9UPC5 381 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 TCAF1Q9Y4C2 921 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 BPTFQ12830 3046 aa13.96□□□□□ -0.17
PTCH1-226ENST00000553011 TPRP12270 2363 aaKnown RBP13.96□□□□□ -0.18
PTCH1-226ENST00000553011 H7C0S8 307 aa13.95□□□□□ -0.18
PTCH1-226ENST00000553011 GRID2O43424 1007 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms