RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PCDHGB2Q9Y5G2 931 aa13.65□□□□□ -0.22
PTCH1-213ENST00000546820 MAD1L1Q9Y6D9 718 aa13.65□□□□□ -0.22
PTCH1-213ENST00000546820 DGKBQ9Y6T7 804 aa13.65□□□□□ -0.22
PTCH1-213ENST00000546820 ADAMTS9Q9P2N4 1935 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 VPS13AQ96RL7 3174 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 FAM237BA0A1B0GVD1 139 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 PRSS38A1L453 326 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 PCDHGA12O60330 932 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 GDF9O60383 454 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 POLBP06746 335 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 IVLP07476 585 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 LIMK1P53667 647 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 TUBB4BP68371 445 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SLC7A5Q01650 507 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 GUCY2DQ02846 1103 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 PEX6Q13608 980 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 GTF2H3Q13889 308 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 ALG11Q2TAA5 492 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 INAVAQ3KP66 663 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 BBS9Q3SYG4 887 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 FASTKD1Q53R41 847 aaKnown RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 TPRG1LQ5T0D9 272 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 DOK6Q6PKX4 331 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 AFTPHQ6ULP2 937 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 CERS6Q6ZMG9 384 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 PHACTR4Q8IZ21 702 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 OR13J1Q8NGT2 312 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 OR2I1PQ8NGU4 316 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 OR4L1Q8NH43 312 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 NETO1Q8TDF5 533 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SCG3Q8WXD2 468 aaKnown RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 STAMBPL1Q96FJ0 436 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 DCUN1D1Q96GG9 259 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SGSM3Q96HU1 749 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SIGLEC10Q96LC7 697 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SUDS3Q9H7L9 328 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 IL21RQ9HBE5 538 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 FAM114A2Q9NRY5 505 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 RXFP3Q9NSD7 469 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 SMOXQ9NWM0 555 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 APOBEC3BQ9UH17 382 aaKnown RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 ZNHIT2Q9UHR6 403 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 CSNK1G3Q9Y6M4 447 aa13.64□□□□□ -0.23
PTCH1-213ENST00000546820 EP300Q09472 2414 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 RIF1Q5UIP0 2472 aaKnown RBP13.64□□□□□ -0.23
PTCH1-213ENST00000546820 KNL1Q8NG31 2342 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CCDC162PA2VCL2 907 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 AGAP14A8MT82 685 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CFAP99D6REC4 459 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CCL22O00626 93 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 GAPDHSO14556 408 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 PFDN6O15212 129 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 PIAS2O75928 621 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CDK14O94921 469 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TTC4O95801 387 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 MSH3P20585 1137 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 DGKAP23743 735 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 NMBRP28336 390 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 AKT1P31749 480 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 POLD2P49005 469 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 PLTPP55058 493 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 DHX9Q08211 1270 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TMEM115Q12893 351 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 BNIP3Q12983 259 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ELOCQ15369 112 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ANKRD20A4Q4UJ75 823 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 AARS2Q5JTZ9 985 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 FNBP1LQ5T0N5 605 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 GPRC6AQ5T6X5 926 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CEP128Q6ZU80 1094 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CENPUQ71F23 418 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ADGRG6Q86SQ4 1221 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 SDCCAG8Q86SQ7 713 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TMEM135Q86UB9 458 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TRIM74Q86UV6 250 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 GALNT13Q8IUC8 556 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 MPP5Q8N3R9 675 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 FSTL5Q8N475 847 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 NOA1Q8NC60 698 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 DDHD1Q8NEL9 900 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 GABPB2Q8TAK5 448 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 OR1E3Q8WZA6 343 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ART4Q93070 314 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 SCARF2Q96GP6 870 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF514Q96K75 400 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF778Q96MU6 729 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 COPS8Q99627 209 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 EBNA1BP2Q99848 306 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 FAM129AQ9BZQ8 928 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 FOXP3Q9BZS1 431 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 OR2AG1Q9H205 316 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 FAM96AQ9H5X1 160 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 CARS2Q9HA77 564 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 EPB41L5Q9HCM4 733 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TREX1Q9NSU2 369 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 TRNAU1APQ9NX07 287 aaKnown RBP13.63□□□□□ -0.23
PTCH1-213ENST00000546820 ATXN10Q9UBB4 475 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 SLC2A6Q9UGQ3 507 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 DOLKQ9UPQ8 538 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 GPSM3Q9Y4H4 160 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms