RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZDHHC1Q8WTX9 485 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GLYATL1Q969I3 302 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 SPATA16Q9BXB7 569 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 ABCG4Q9H172 646 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 DPEP2Q9H4A9 486 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 ARNT2Q9HBZ2 717 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 IL26Q9NPH9 171 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 ATXN10Q9UBB4 475 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 AAR2Q9Y312 384 aaKnown RBP14.06□□□□□ -0.16
USP28-209ENST00000540925 ENTPD2Q9Y5L3 495 aa14.06□□□□□ -0.16
USP28-209ENST00000540925 GOLGA6L9A6NEM1 432 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 D6RAR5 112 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 DXOO77932 396 aaKnown RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 CCDC175P0C221 793 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 MAZP56270 477 aaKnown RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 CCL7P80098 99 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 B4GALNT1Q00973 533 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 OLIG2Q13516 323 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 ATP13A5Q4VNC0 1218 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 KHDC1Q4VXA5 237 aaKnown RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 IGF2-ASQ6U949 168 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 MARK2Q7KZI7 788 aaKnown RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 ADGRG6Q86SQ4 1221 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 ARL14Q8N4G2 192 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 PATE1Q8WXA2 126 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 PRR11Q96HE9 360 aaPredicted RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 FERMT1Q9BQL6 677 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 FICDQ9BVA6 458 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 SUDS3Q9H7L9 328 aaPredicted RBP14.05□□□□□ -0.16
USP28-209ENST00000540925 TRIM39Q9HCM9 518 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 BPIFA1Q9NP55 256 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 GPSM3Q9Y4H4 160 aa14.05□□□□□ -0.16
USP28-209ENST00000540925 BRINP1O60477 761 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 USP12O75317 370 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 PPFIA2O75334 1257 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 STK10O94804 968 aaKnown RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 ECEL1O95672 775 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 EML2O95834 649 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 SLC4A1P02730 911 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ZNF8P17098 575 aaPredicted RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 CA5AP35218 305 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ACTR1BP42025 376 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 LSSP48449 732 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 CLCNKAP51800 687 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ACTR1AP61163 376 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 PEX6Q13608 980 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 SIX1Q15475 284 aaPredicted RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 ZNF648Q5T619 568 aaPredicted RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 ZDHHC20Q5W0Z9 365 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 GLT6D1Q7Z4J2 308 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 B3GNT8Q7Z7M8 397 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 SLC13A5Q86YT5 568 aaPredicted RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 CCNJLQ8IV13 435 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ZNF547Q8IVP9 402 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 SFRP1Q8N474 314 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 FAM71DQ8N9W8 422 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 BLOC1S5Q8TDH9 187 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ATXN7L3BQ96GX2 97 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 PPP1R2P1Q96PQ5 205 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 C19orf43Q9BQ61 176 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 TMEM121Q9BTD3 319 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 FSD1LQ9BXM9 530 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 FRMD8P1Q9BZ68 369 aaPredicted RBP14.04□□□□□ -0.16
USP28-209ENST00000540925 OR2AG1Q9H205 316 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 LRRN3Q9H3W5 708 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 GRPEL1Q9HAV7 217 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 ARFGAP3Q9NP61 516 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 LRIT1Q9P2V4 623 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 RAXQ9Y2V3 346 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 PRKAB1Q9Y478 270 aa14.04□□□□□ -0.16
USP28-209ENST00000540925 A0A087WV48 116 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 GRID2O43424 1007 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 B4GAT1O43505 415 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 TLX3O43711 291 aaPredicted RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 LIASO43766 372 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 SLC25A14O95258 325 aaPredicted RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 METTL18O95568 372 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 ASMTLO95671 621 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 RPLP0P05388 317 aaKnown RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 FASLGP48023 281 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 ZFP36L1Q07352 338 aaKnown RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 SPIDRQ14159 915 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 PARP6Q2NL67 630 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 TMPRSS9Q7Z410 1059 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 C11orf96Q7Z7L8 435 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 PHYKPLQ8IUZ5 450 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 SNIP1Q8TAD8 396 aaKnown RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 ATG4AQ8WYN0 398 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 LIN37Q96GY3 246 aaPredicted RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 TLR10Q9BXR5 811 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 POLR1BQ9H9Y6 1135 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 ASCL3Q9NQ33 180 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 LZTFL1Q9NQ48 299 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 SMOXQ9NWM0 555 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP28-209ENST00000540925 TBC1D29Q9UFV1 150 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 ZNHIT2Q9UHR6 403 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 ARL5AQ9Y689 179 aa14.03□□□□□ -0.16
USP28-209ENST00000540925 GCN1Q92616 2671 aaKnown RBP14.03□□□□□ -0.16
USP28-209ENST00000540925 SMG1Q96Q15 3661 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms