RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SYNCRIPO60506 623 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 GUCY1B2O75343 617 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ENTPD3O75355 529 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 TRIM3O75382 744 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 BBOX1O75936 387 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 CNTN5O94779 1100 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 IL18RAPO95256 599 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 NDUFB10O96000 172 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 CHRNA1P02708 482 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 HMGCRP04035 888 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 C2P06681 752 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GNAO1P09471 354 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ARP10275 920 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 UBL4AP11441 157 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 PRKCAP17252 672 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 POLR2CP19387 275 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 EEF1B2P24534 225 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 RBL1P28749 1068 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 BMPR1AP36894 532 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ETV6P41212 452 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GRIA3P42263 894 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ALDH7A1P49419 539 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 GLUD2P49448 558 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 SLC26A2P50443 739 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 AP2S1P53680 142 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 EIF6P56537 245 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 FKBP1AP62942 108 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 TNFAIP2Q03169 654 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 EIF2B5Q13144 721 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 PEX6Q13608 980 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 DAG1Q14118 895 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 TYSND1Q2T9J0 566 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 C15orf59Q2T9L4 293 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 PLEKHG6Q3KR16 790 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 C5orf22Q49AR2 442 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 PTPN20Q4JDL3 420 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 C2CD6Q53TS8 623 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 C6orf141Q5SZD1 244 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 SYT6Q5T7P8 510 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 HEATR6Q6AI08 1181 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 TMC5Q6UXY8 1006 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ZPBP2Q6X784 338 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 CCDC81Q6ZN84 652 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ATG14Q6ZNE5 492 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ADCK1Q86TW2 530 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 TMEM135Q86UB9 458 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ZDHHC17Q8IUH5 632 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GRAMD2AQ8IUY3 354 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 SLC22A9Q8IVM8 553 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 CCDC117Q8IWD4 279 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 BRSK2Q8IWQ3 736 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ESX1Q8N693 406 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 MARCH10Q8NA82 808 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 SETD9Q8NE22 299 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ZNF555Q8NEP9 628 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 PJA1Q8NG27 643 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 OR52E4Q8NGH9 312 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GABPB2Q8TAK5 448 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 ZSCAN18Q8TBC5 510 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 SPPL2BQ8TCT7 592 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 DYNC2LI1Q8TCX1 351 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ARNTL2Q8WYA1 636 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 FCGR1BQ92637 280 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 HDAC10Q969S8 669 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 WDR89Q96FK6 387 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 RIPOR3Q96MK2 946 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GPR101Q96P66 508 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 CSF3RQ99062 836 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 GPR22Q99680 433 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 NPAS2Q99743 824 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 APOL4Q9BPW4 351 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 MRPL57Q9BQC6 102 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 CLSTN3Q9BQT9 956 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 AIFM2Q9BRQ8 373 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 IDI2Q9BXS1 227 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 EMILIN2Q9BXX0 1053 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ASPSCR1Q9BZE9 553 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 COA1Q9GZY4 146 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 NAA50Q9GZZ1 169 aaKnown RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 WDR55Q9H6Y2 383 aaPredicted RBP6.67□□□□□ -1.34
USP28-207ENST00000538475 CYP3A43Q9HB55 503 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 KCNH7Q9NS40 1196 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 CISHQ9NSE2 258 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP28-207ENST00000538475 BFARQ9NZS9 450 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 VPS51Q9UID3 782 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 FBXO5Q9UKT4 447 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ERVW-1Q9UQF0 538 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 PDE10AQ9Y233 779 aa6.67□□□□□ -1.34
USP28-207ENST00000538475 ZNF646O15015 1829 aaPredicted RBP6.66□□□□□ -1.34
USP28-207ENST00000538475 ZNF236Q9UL36 1845 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 ANKRD36A6QL64 1941 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 A0A087X1B8 175 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 WDR27A2RRH5 827 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 C2CD4BA6NLJ0 364 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 KCNU1A8MYU2 1149 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 LOC110117498-PIK3R3F6TDL0 507 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 STX16-NPEPL1H3BU86 382 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 EI24O14681 340 aa6.66□□□□□ -1.34
USP28-207ENST00000538475 ANGPT2O15123 496 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms