RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ZDHHC11BP0C7U3 371 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SRGAP2BP0DMP2 458 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CTSAP10619 480 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ATF2P15336 505 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 HMGA1P17096 107 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 ERCC2P18074 760 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TGM2P21980 687 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 IVDP26440 423 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 KLRC2P26717 231 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 RBL1P28749 1068 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CCR1P32246 355 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ELF1P32519 619 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 HPDP32754 393 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 BMPR1AP36894 532 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ADCY8P40145 1251 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ALDH1A3P47895 512 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TUFMP49411 452 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 KCNQ1P51787 676 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 COPAP53621 1224 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ITGA8P53708 1063 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 MAPK10P53779 464 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 GP2P55259 537 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 ERVFC1P60507 584 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CYP4F8P98187 520 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CHRNEQ04844 493 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 COX10Q12887 443 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 BNIP3Q12983 259 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SEMA3BQ13214 749 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 EIF4EBP2Q13542 120 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 PMS2P11Q13670 270 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 BLMHQ13867 455 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CASP8Q14790 479 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SHHQ15465 462 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 NR0B2Q15466 257 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 P3H1Q32P28 736 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ARL13BQ3SXY8 428 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CCDC38Q502W7 563 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 BRMS1LQ5PSV4 323 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CFAP58Q5T655 872 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 UBAP2Q5T6F2 1119 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 CD276Q5ZPR3 534 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 AP1ARQ63HQ0 302 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 RWDD4Q6NW29 188 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 MZT2BQ6NZ67 158 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 MZT2AQ6P582 158 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 EMBQ6PCB8 327 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 RFX8Q6ZV50 586 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 BEND5Q7L4P6 421 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CCDC25Q86WR0 208 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 VSIG1Q86XK7 387 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 PSTKQ8IV42 348 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 LIX1LQ8IVB5 337 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ARHGAP18Q8N392 663 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 NPWQ8N729 165 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 FAM71DQ8N9W8 422 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ZNF461Q8TAF7 563 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 FBXO25Q8TCJ0 367 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SPPL3Q8TCT6 385 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 CALML6Q8TD86 181 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 DEPDC1BQ8WUY9 529 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 P3H4Q92791 437 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 HOXB13Q92826 284 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 SLCO2A1Q92959 643 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 NKD2Q969F2 451 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 CAVIN3Q969G5 261 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TRIM63Q969Q1 353 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 WBP2Q969T9 261 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SLC35A4Q96G79 324 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SNF8Q96H20 258 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ZNF512Q96ME7 567 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 PWWP2AQ96N64 755 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SAMD11Q96NU1 681 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SERPINB11Q96P15 392 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 AGAP3Q96P47 875 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 KLHL5Q96PQ7 755 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 QKIQ96PU8 341 aaKnown RBP eCLIP4.22□□□□□ -1.73
CD44-226ENST00000527889 ALPK1Q96QP1 1244 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SERINC2Q96SA4 455 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 FMO2Q99518 471 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TCF25Q9BQ70 676 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TRIM62Q9BVG3 475 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ABCG4Q9H172 646 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 KCNH6Q9H252 994 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 MTIF3Q9H2K0 278 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 PCDH9Q9HC56 1237 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 TRPC7Q9HCX4 862 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ZDHHC18Q9NUE0 388 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 MRGBPQ9NV56 204 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 ARHGEF38Q9NXL2 777 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 SEPT10Q9P0V9 454 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 FTSJ1Q9UET6 329 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 OR12D3Q9UGF7 316 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 HPCAL4Q9UM19 191 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 DRG1Q9Y295 367 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 YBX2Q9Y2T7 364 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 NEU2Q9Y3R4 380 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 INSL5Q9Y5Q6 135 aa4.22□□□□□ -1.73
CD44-226ENST00000527889 MUC22E2RYF6 1773 aaPredicted RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 ANKRD17O75179 2603 aaKnown RBP4.22□□□□□ -1.73
CD44-226ENST00000527889 MDC1Q14676 2089 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms