RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GSTA3Q16772 222 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TRMT5Q32P41 509 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 DGKKQ5KSL6 1271 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GPR107Q5VW38 600 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 METTL21CQ5VZV1 264 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 CYP2R1Q6VVX0 501 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 DPY19L3Q6ZPD9 716 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SYDE1Q6ZW31 735 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 LDB1Q86U70 411 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GAB3Q8WWW8 586 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TBL1YQ9BQ87 522 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MLPHQ9BV36 600 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 UNKQ9C0B0 810 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC6A17Q9H1V8 727 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GBA3Q9H227 469 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 CHRAC1Q9NRG0 131 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ELOVL2Q9NXB9 296 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TXNDC16Q9P2K2 825 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PSMC3IPQ9P2W1 217 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 RAI2Q9Y5P3 530 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 LINC00854A0A1B0GVQ3 168 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TOR1BO14657 336 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 KDELR3O43731 214 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 IVDP26440 423 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 EEF1DP29692 281 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 FDFT1P37268 417 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GEMP55040 296 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 RAD51Q06609 339 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 BNIP3Q12983 259 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MORF4L2Q15014 288 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TLR1Q15399 786 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PGS1Q32NB8 556 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ANKRD20A4Q4UJ75 823 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ARSIQ5FYB1 569 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TTC39BQ5VTQ0 682 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TMEM215Q68D42 235 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ACAD11Q709F0 780 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PCGF5Q86SE9 256 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MMAAQ8IVH4 418 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 IGDCC3Q8IVU1 814 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SPNS2Q8IVW8 549 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 FIBINQ8TAL6 211 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 KLK6Q92876 244 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MFSD3Q96ES6 412 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF778Q96MU6 729 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GPATCH1Q9BRR8 931 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 FRMD8P1Q9BZ68 369 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GPR63Q9BZJ6 419 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 WHRNQ9P202 907 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 DAPK2Q9UIK4 370 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 APOBEC2Q9Y235 224 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 FARP1Q9Y4F1 1045 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TRIM49D1C9J1S8 452 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 K7EPI3 171 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 GCATO75600 419 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 IGSF6O95976 241 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 APODP05090 189 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 CDH3P22223 829 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TCEA1P23193 301 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MAP4P27816 1152 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SPIDRQ14159 915 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SMYD5Q6GMV2 418 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 NAPEPLDQ6IQ20 393 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 FBXL19Q6PCT2 694 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PPP1R14BQ96C90 147 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 KLHL32Q96NJ5 620 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 NECTIN4Q96NY8 510 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 CCDC134Q9H6E4 229 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PRM3Q9NNZ6 103 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 DDX28Q9NUL7 540 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 PTTG2Q9NZH5 202 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 CD84Q9UIB8 345 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 TRHDEQ9UKU6 1024 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SMG5Q9UPR3 1016 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 MTO1Q9Y2Z2 717 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SNX13Q9Y5W8 968 aa8.64□□□□□ -1.03
LIMCH1-209ENST00000509277 SMIM31A0A1B0GVY4 71 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 A0A1W2PQ67 120 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SYNCRIPO60506 623 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 KCNH1O95259 989 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CLIC3O95833 236 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ERVK-10P10266 1014 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SRCP12931 536 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC5A2P31639 672 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 GMPRP36959 345 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 PSMD8P48556 350 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 LSM3P62310 102 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 BST1Q10588 318 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 FLOT2Q14254 428 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 PDGFRLQ15198 375 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CTC1Q2NKJ3 1217 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DRICH1Q6PGQ1 229 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 KIAA1324Q6UXG2 1013 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TPRG1Q6ZUI0 275 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DEPDC4Q8N2C3 294 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 STK40Q8N2I9 435 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DCAF4L2Q8NA75 395 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SMYD1Q8NB12 490 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DCUN1D1Q96GG9 259 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 MSLNLQ96KJ4 702 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms