RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 TTC1Q99614 292 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 CAPN10Q9HC96 672 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 CATSPERZQ9NTU4 200 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 C20orf96Q9NUD7 363 aaPredicted RBP14.44□□□□□ -0.1
BRCA1-223ENST00000494123 KLQ9UEF7 1012 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 CNOT6Q9ULM6 557 aaKnown RBP14.44□□□□□ -0.1
BRCA1-223ENST00000494123 SNX11Q9Y5W9 270 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 FAM169AQ9Y6X4 670 aa14.44□□□□□ -0.1
BRCA1-223ENST00000494123 ZCWPW2A0A1B0GU75 182 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ZNF806P0C7X5 589 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ECHS1P30084 290 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 AKT1P31749 480 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 FOXN2P32314 431 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 CBLBQ13191 982 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 AARS2Q5JTZ9 985 aaKnown RBP14.43□□□□□ -0.1
BRCA1-223ENST00000494123 LDLRAP1Q5SW96 308 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 TPRG1LQ5T0D9 272 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 GPRC6AQ5T6X5 926 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 TCEAL6Q6IPX3 200 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 PSAPL1Q6NUJ1 521 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 IL27RAQ6UWB1 636 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 UNC5AQ6ZN44 842 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 PARGQ86W56 976 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 SPATS2Q86XZ4 545 aaKnown RBP14.43□□□□□ -0.1
BRCA1-223ENST00000494123 NXPE1Q8N323 547 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 GABPB2Q8TAK5 448 aaPredicted RBP14.43□□□□□ -0.1
BRCA1-223ENST00000494123 TCEAL3Q969E4 200 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 COX14Q96I36 57 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 PHOX2BQ99453 314 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 WDR83Q9BRX9 315 aaKnown RBP14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ZDHHC5Q9C0B5 715 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ZCCHC2Q9C0B9 1178 aaKnown RBP14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ANKZF1Q9H8Y5 726 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 ARFGAP3Q9NP61 516 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 FSCN3Q9NQT6 498 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 GPR27Q9NS67 375 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 TMEM98Q9Y2Y6 226 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 PLXNB3Q9ULL4 1909 aa14.43□□□□□ -0.1
BRCA1-223ENST00000494123 VPS13AQ96RL7 3174 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 GPR179Q6PRD1 2367 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 TMEM202A6NGA9 273 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 GOLGA8KD6RF30 607 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 GOLGA8TH3BQL2 631 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 ARHGAP33O14559 1287 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 CD3EAPO15446 510 aaKnown RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 LRP3O75074 770 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 PRSS56P0CW18 603 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 RALBP11234 206 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 MSH3P20585 1137 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 PPARGP37231 505 aaPredicted RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 CTSKP43235 329 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 MAGEA4P43358 317 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 CDKN1CP49918 316 aaPredicted RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 ATXN3P54252 364 aaPredicted RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 IRX4P78413 519 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 GTF2H3Q13889 308 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 FZD2Q14332 565 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 ERCC6LQ2NKX8 1250 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 LYPLAL1Q5VWZ2 237 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 MRNIPQ6NTE8 343 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 CAPN12Q6ZSI9 719 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 MICALCLQ6ZW33 695 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 SDCCAG8Q86SQ7 713 aaPredicted RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 SERPINA9Q86WD7 417 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 OXR1Q8N573 874 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 DDHD1Q8NEL9 900 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 DCUN1D1Q96GG9 259 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 SGSM3Q96HU1 749 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 C9orf72Q96LT7 481 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 COPS8Q99627 209 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 GTPBP2Q9BX10 602 aaKnown RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 OR2AG1Q9H205 316 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 TRIM39Q9HCM9 518 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 PPANQ9NQ55 473 aaKnown RBP14.42□□□□□ -0.1
BRCA1-223ENST00000494123 SEMA4GQ9NTN9 838 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 DNAJC28Q9NX36 388 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 IL1RAPL1Q9NZN1 696 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 TMPRSS11EQ9UL52 423 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 CACNA1EQ15878 2313 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 ADAMTS9Q9P2N4 1935 aa14.42□□□□□ -0.1
BRCA1-223ENST00000494123 USP34Q70CQ2 3546 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 TRBV5-4A0A0C4DH59 114 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 AGAP14A8MT82 685 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 CFAP99D6REC4 459 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 MTX2O75431 263 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ENGP17813 658 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ACRV1P26436 265 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ARNTP27540 789 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 PMLP29590 882 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ARCN1P48444 511 aaKnown RBP14.41□□□□□ -0.1
BRCA1-223ENST00000494123 BLKP51451 505 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 SRP54P61011 504 aaKnown RBP14.41□□□□□ -0.1
BRCA1-223ENST00000494123 BNC1Q01954 994 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 PPARDQ03181 441 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 CSRP2Q16527 193 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ZNF542PQ5EBM4 170 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 ZNF648Q5T619 568 aaPredicted RBP14.41□□□□□ -0.1
BRCA1-223ENST00000494123 NEPROQ6NW34 567 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 CERS6Q6ZMG9 384 aa14.41□□□□□ -0.1
BRCA1-223ENST00000494123 MARK2Q7KZI7 788 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms