RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C6P13671 934 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 TCF4P15884 667 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 MAPK1P28482 360 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CASP14P31944 242 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SERPINB6P35237 376 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 HSPA9P38646 679 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 MMP12P39900 470 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SSR1P43307 286 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SCNN1BP51168 640 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 DUSP3P51452 185 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 AP1S1P61966 158 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 YPEL5P62699 121 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 POLR2LP62875 67 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 E2F1Q01094 437 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC25A11Q02978 314 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 BCL2L1Q07817 233 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 KRT81Q14533 505 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF235Q14590 738 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 IRF4Q15306 451 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 HADHQ16836 314 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CCDC122Q5T0U0 273 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 HES3Q5TGS1 186 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ALG1LQ6GMV1 187 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ZCCHC8Q6NZY4 707 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ALKBH5Q6P6C2 394 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 MACC1Q6ZN28 852 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ARHGAP36Q6ZRI8 547 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SRLQ86TD4 932 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 MARCH9Q86YJ5 346 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CAMK1DQ8IU85 385 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 IGDCC3Q8IVU1 814 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 BBS5Q8N3I7 341 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 PAF1Q8N7H5 531 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 LINC01356Q8N9X3 169 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF548Q8NEK5 533 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 MDM1Q8TC05 714 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 NSMCE1Q8WV22 266 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 RFFLQ8WZ73 363 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 NXPE2Q96DL1 559 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 TBATAQ96M53 351 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF599Q96NL3 588 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CSPG4P5Q96PW8 444 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 PSKH2Q96QS6 385 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 XPO4Q9C0E2 1151 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 NCKIPSDQ9NZQ3 722 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 RCOR3Q9P2K3 495 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 SPASTQ9UBP0 616 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 APOBEC3BQ9UH17 382 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 LCMT1Q9UIC8 334 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ATP8A1Q9Y2Q0 1164 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 CSNK1G3Q9Y6M4 447 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 APC2O95996 2303 aa6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 URB1O60287 2271 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-213ENST00000476903 ANKRD11Q6UB99 2663 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ARHGEF17Q96PE2 2063 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 A0A1W2PQ67 120 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CFAP69A5D8W1 941 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TAF4O00268 1085 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TPP1O14773 563 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 NEBLO76041 1014 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 GP1BAP07359 652 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TPM1P09493 284 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ELFN1P0C7U0 828 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 GIMD1P0DJR0 217 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 NFKBIAP25963 317 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 HTR1BP28222 390 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 HNRNPH3P31942 346 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 EIF4A3P38919 411 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 RGRP47804 291 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 LIG3P49916 1009 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 PEX5P50542 639 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CDH6P55285 790 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 PPARDQ03181 441 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CYP4F3Q08477 520 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC10A7Q0GE19 358 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 EIF2B5Q13144 721 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TARDBPQ13148 414 aaKnown RBP eCLIP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC18A3Q16572 532 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 WSCD2Q2TBF2 565 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TPRG1LQ5T0D9 272 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 FAXCQ5TGI0 409 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 SPECC1LQ69YQ0 1117 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 TXNRD3NBQ6F5E7 133 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 KDM7AQ6ZMT4 941 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 LRRC49Q8IUZ0 686 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 PHACTR4Q8IZ21 702 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ATPAF2Q8N5M1 289 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 OR8K1Q8NGG5 319 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ATL2Q8NHH9 583 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF564Q8TBZ8 553 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 LMX1AQ8TE12 382 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 MZB1Q8WU39 189 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CTNNBL1Q8WYA6 563 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ECHDC3Q96DC8 303 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 APOLD1Q96LR9 279 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 NUDCD1Q96RS6 583 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 IL12RB2Q99665 862 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 MGME1Q9BQP7 344 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 SLC13A1Q9BZW2 595 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms