RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 RAB43Q86YS6 212 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FAM71AQ8IYT1 594 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 LINC00518Q8N0U6 118 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 RBFAQ8N0V3 343 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 LILRA2Q8N149 483 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 STX19Q8N4C7 294 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 NAT8LQ8N9F0 302 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 PSD4Q8NDX1 1056 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 OR5H6Q8NGV6 325 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 OR2T34Q8NGX1 318 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 OR6P1Q8NGX9 317 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 OR2T3Q8NH03 318 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FBXO27Q8NI29 283 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 RDH11Q8TC12 318 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FANK1Q8TC84 345 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FAM45AQ8TCE6 357 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SH3RF3Q8TEJ3 882 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SNX19Q92543 992 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FIG4Q92562 907 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 RPL3LQ92901 407 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 MUL1Q969V5 352 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ZNF566Q969W8 418 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SGK3Q96BR1 496 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ZNF669Q96BR6 464 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SHISA4Q96DD7 197 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 MISP3Q96FF7 219 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 EEF2KMTQ96G04 330 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 TRMT2BQ96GJ1 504 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 PRR11Q96HE9 360 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 AHCYL2Q96HN2 611 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 MAP6Q96JE9 813 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ARL5BQ96KC2 179 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 UBXN10Q96LJ8 280 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 HEXIM2Q96MH2 286 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SLC29A1Q99808 456 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 HOPXQ9BPY8 73 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 HERPUD2Q9BSE4 406 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 NAT9Q9BTE0 207 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 BDH2Q9BUT1 245 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 TEKT3Q9BXF9 490 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 C1QTNF7Q9BXJ2 289 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ING2Q9H160 280 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 C8orf33Q9H7E9 229 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 LRRC40Q9H9A6 602 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SLC52A2Q9HAB3 445 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SPAG4Q9NPE6 437 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 PRDM11Q9NQV5 511 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 DUS2Q9NX74 493 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 GLTPQ9NZD2 209 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 IFT80Q9P2H3 777 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 GTF2IRD1Q9UHL9 959 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 POLG2Q9UHN1 485 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 TLK1Q9UKI8 766 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ACSL5Q9ULC5 683 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 TRAPPC4Q9Y296 219 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 TMEM5Q9Y2B1 443 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 BTBD3Q9Y2F9 522 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ANKRD6Q9Y2G4 727 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 NAALAD2Q9Y3Q0 740 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 IPPQ9Y573 584 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 PCDHGB2Q9Y5G2 931 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 KLF2Q9Y5W3 355 aaPredicted RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SNX13Q9Y5W8 968 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 ST14Q9Y5Y6 855 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 COPG1Q9Y678 874 aaKnown RBP4.84□□□□□ -1.63
SF3B1-207ENST00000468925 SESN1Q9Y6P5 492 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 HSPE1-MOB4S4R3N1 261 aa4.84□□□□□ -1.63
SF3B1-207ENST00000468925 RGPD8O14715 1765 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-207ENST00000468925 RGPD5Q99666 1765 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 ARAP2Q8WZ64 1704 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 ROBO2Q9HCK4 1378 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 PRR36Q9H6K5 1346 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 PRAMEF27A3QJZ7 478 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 C12orf71A8MTZ7 269 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 WASH4PA8MWX3 477 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 ZNF99A8MXY4 864 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-207ENST00000468925 TRIM49D1C9J1S8 452 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 PRSS44E7EML9 344 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 ATP6V1G2-DDX39BF2Z307 99 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 TRIM77I1YAP6 450 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 PLD2O14939 933 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 TRIM24O15164 1050 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 HDAC3O15379 428 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 PI15O43692 258 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 FOXD2O60548 495 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-207ENST00000468925 AKAP3O75969 853 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 FGF18O76093 207 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 CNTN5O94779 1100 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 TSPAN12O95859 305 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 APOC1P02654 83 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 KRT1P04264 644 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 SUPT20HL2P0C7V6 817 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 RALAP11233 206 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 ACADMP11310 421 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 CPEP16870 476 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 CYP2A7P20853 494 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 NME2P22392 152 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 HLA-DMAP28067 261 aa4.83□□□□□ -1.64
SF3B1-207ENST00000468925 EPHA3P29320 983 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms