RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SLC9A4Q6AI14 798 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 TMEM71Q6P5X7 295 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 SNRNP27Q8WVK2 155 aaKnown RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 TFB1MQ8WVM0 346 aaKnown RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 ART4Q93070 314 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 TTC25Q96NG3 672 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 SRPK1Q96SB4 655 aaKnown RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 ASPSCR1Q9BZE9 553 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 FAM117AQ9C073 453 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 SLC25A51Q9H1U9 297 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 OR2AG1Q9H205 316 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 CARD9Q9H257 536 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 ARFGAP3Q9NP61 516 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 LUC7LQ9NQ29 371 aaKnown RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 KLHL3Q9UH77 587 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 ZNF711Q9Y462 761 aa17.35■□□□□ 0.37
COL7A1-206ENST00000466591 OAS3Q9Y6K5 1087 aaKnown RBP17.35■□□□□ 0.37
COL7A1-206ENST00000466591 OR5K4A6NMS3 321 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 PDZK1P1A8MUH7 402 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 FADS2P1A8MWK0 482 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 PMPCBO75439 489 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 RAB15P59190 212 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 ASTE1Q2TB18 679 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-206ENST00000466591 PLA2G4EQ3MJ16 856 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 CCDC181Q5TID7 509 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 LRRC38Q5VT99 294 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 CRTC3Q6UUV7 619 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 B4GALNT4Q76KP1 1039 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 VSIG1Q86XK7 387 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 SFRP1Q8N474 314 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 TTC9Q92623 222 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 IMP4Q96G21 291 aaKnown RBP17.34■□□□□ 0.37
COL7A1-206ENST00000466591 FERMT1Q9BQL6 677 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 MAGEE1Q9HCI5 957 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 SARS2Q9NP81 518 aaKnown RBP17.34■□□□□ 0.37
COL7A1-206ENST00000466591 KLHL8Q9P2G9 620 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-206ENST00000466591 TBC1D29Q9UFV1 150 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL7A1-206ENST00000466591 HYOU1Q9Y4L1 999 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 ST14Q9Y5Y6 855 aa17.34■□□□□ 0.37
COL7A1-206ENST00000466591 KIR2DS5A0A0G2JLQ3 304 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 A0A0G2JNG1 304 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 KIR2DS3K7RE56 304 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 NUAK1O60285 661 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 DNAJC6O75061 913 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 MMP2P08253 660 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 THRAP10827 490 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 F3P13726 295 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 PLA2G2AP14555 144 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 VCLP18206 1134 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 COMTP21964 271 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 NR2C2P49116 596 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 IHHQ14623 411 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 KIR2DS5Q14953 304 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 LLGL1Q15334 1064 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 SPA17Q15506 151 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 PCSK4Q6UW60 755 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 ZNF574Q6ZN55 896 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-206ENST00000466591 PRICKLE2Q7Z3G6 844 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 TRAM1L1Q8N609 369 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 CNTD1Q8N815 330 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 P3H4Q92791 437 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 B3GNT4Q9C0J1 378 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 GLOD4Q9HC38 313 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 KLC4Q9NSK0 619 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 UBP1Q9NZI7 540 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 ATXN10Q9UBB4 475 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 DNAJC16Q9Y2G8 782 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 SSUH2Q9Y2M2 353 aa17.33■□□□□ 0.36
COL7A1-206ENST00000466591 BPTFQ12830 3046 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 GPR89AB7ZAQ6 455 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 MTSS1O43312 755 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 CST8O60676 142 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 NDST3O95803 873 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 VIPP01282 170 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 GPR89BP0CG08 455 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 FGF3P11487 239 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 ZNF8P17098 575 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 CSF2RBP32927 897 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 MAGEA1P43355 309 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 SRSF6Q13247 344 aaKnown RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 SEPT7Q16181 437 aaKnown RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 PDPK2PQ6A1A2 396 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 SPATA22Q8NHS9 363 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 EXTL1Q92935 676 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 GLYATL1Q969I3 302 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 KIAA1143Q96AT1 154 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 DDA1Q9BW61 102 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 TRIM5Q9C035 493 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 TRIM39Q9HCM9 518 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 TMEM9Q9P0T7 183 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 CPNE7Q9UBL6 633 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 INTUQ9ULD6 942 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 PCDHGA4Q9Y5G9 962 aa17.32■□□□□ 0.36
COL7A1-206ENST00000466591 FASNP49327 2511 aaKnown RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 ARHGEF17Q96PE2 2063 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-206ENST00000466591 MACROD2A1Z1Q3 448 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 J3QKU1 62 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 PSTPIP1O43586 416 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 SLC28A2O43868 658 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms