RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, human

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT4-208	ENST00000465721	LYSMD3	Q7Z3D4	306 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	POLN	Q7Z5Q5	900 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	BBS5	Q8N3I7	341 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	GALNT11	Q8NCW6	608 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	ENOX1	Q8TC92	643 aa	Known RBP	11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	C9orf72	Q96LT7	481 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	WDR24	Q96S15	920 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	PRDM8	Q9NQV8	689 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	CPNE7	Q9UBL6	633 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	CNOT8	Q9UFF9	292 aa	Known RBP	11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	ZNHIT2	Q9UHR6	403 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	TLK1	Q9UKI8	766 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	PCDHB3	Q9Y5E6	796 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	PIKFYVE	Q9Y2I7	2098 aa		11.64	□□□□□ -0.55
CNOT4-208	ENST00000465721	POLE	Q07864	2286 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	MDC1	Q14676	2089 aa	Known RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	FADS2P1	A8MWK0	482 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	TMCO5B	A8MYB1	307 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	DNAJB5	O75953	348 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	RNF8	O76064	485 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	AGFG2	O95081	481 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	ATP1A3	P13637	1013 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	SLC2A4	P14672	509 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	TCF4	P15884	667 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	FOXM1	Q08050	763 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	HENMT1	Q5T8I9	393 aa	Known RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	MARC1	Q5VT66	337 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	PLXDC1	Q8IUK5	500 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	APLF	Q8IW19	511 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	TEX26	Q8N6G2	289 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	CSPG4P5	Q96PW8	444 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	ERGIC2	Q96RQ1	377 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	NUP62CL	Q9H1M0	184 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	ZNF768	Q9H5H4	540 aa	Known RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	ZWILCH	Q9H900	591 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	UCK1	Q9HA47	277 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	NT5M	Q9NPB1	228 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	RCOR3	Q9P2K3	495 aa	Predicted RBP	11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	PCDHGA6	Q9Y5G7	932 aa		11.63	□□□□□ -0.55
CNOT4-208	ENST00000465721	APC	P25054	2843 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	CDC14C	A4D256	554 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	SNX2	O60749	519 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	KIAA0754	O94854	1291 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	NDUFA10	O95299	355 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	PRL	P01236	227 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	TPM2	P07951	284 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	FER	P16591	822 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	ARL4A	P40617	200 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	NOP2	P46087	812 aa	Known RBP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	LEPR	P48357	1165 aa	Known RBP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	DNASE1L3	Q13609	305 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	SMTNL2	Q2TAL5	461 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	FHL5	Q5TD97	284 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	IRF2BP2	Q7Z5L9	587 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	RAVER1	Q8IY67	606 aa	Known RBP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	AVL9	Q8NBF6	648 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	SSC4D	Q8WTU2	575 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	CT55	Q8WUE5	264 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	STAMBPL1	Q96FJ0	436 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	PLEKHG4B	Q96PX9	1271 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	OR6C1	Q96RD1	312 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	TDRD1	Q9BXT4	1180 aa	Known RBP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	TRIM55	Q9BYV6	548 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	BRD8	Q9H0E9	1235 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	RMI1	Q9H9A7	625 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	FANCL	Q9NW38	375 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	KCND3	Q9UK17	655 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	DNPEP	Q9ULA0	475 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	ADGRG1	Q9Y653	693 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	SLC30A1	Q9Y6M5	507 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	SVIL	O95425	2214 aa		11.62	□□□□□ -0.55
CNOT4-208	ENST00000465721	ANKRD12	Q6UB98	2062 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	PCM1	Q15154	2024 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	OR5K4	A6NMS3	321 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	TOX3	O15405	576 aa	Predicted RBP	11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	NUAK1	O60285	661 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	SEMA7A	O75326	666 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	VPS4B	O75351	444 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	KATNA1	O75449	491 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	CREG1	O75629	220 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	SORBS2	O94875	1100 aa	Known RBP	11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	TIAF1	O95411	115 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	CLDN7	O95471	211 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	RECK	O95980	971 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	FGF5	P12034	268 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	TYRP1	P17643	537 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	PCK1	P35558	622 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	GARS	P41250	739 aa	Known RBP	11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	SEPHS1	P49903	392 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	CLCNKA	P51800	687 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	EPHB1	P54762	984 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	DSC2	Q02487	901 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	SEMA5A	Q13591	1074 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	IL11RA	Q14626	422 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	PPP1R2P3	Q6NXS1	205 aa		11.61	□□□□□ -0.55
CNOT4-208	ENST00000465721	TMEM26	Q6ZUK4	368 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms