RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FOXR1Q6PIV2 292 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 PID1Q7Z2X4 250 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 SFRP1Q8N474 314 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 LRRC57Q8N9N7 239 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 DTX3LQ8TDB6 740 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 OXNAD1Q96HP4 312 aaPredicted RBP19.2■□□□□ 0.66
USP40-207ENST00000450940 MRGPRX2Q96LB1 330 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 PLEKHG4BQ96PX9 1271 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 HERPUD2Q9BSE4 406 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 SPATA16Q9BXB7 569 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 HEMGNQ9BXL5 484 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 TRABDQ9H4I3 376 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 TRIM39Q9HCM9 518 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 KLHL8Q9P2G9 620 aaPredicted RBP19.2■□□□□ 0.66
USP40-207ENST00000450940 ATXN10Q9UBB4 475 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 CCDC66A2RUB6 948 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 A6NCN8 305 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 AURKAO14965 403 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 CHUKO15111 745 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 EML2O95834 649 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 HMGCLP35914 325 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 CLCNKAP51800 687 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 VAV2P52735 878 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 UCNP55089 124 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 ZNF569Q5MCW4 686 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 ZNF574Q6ZN55 896 aaPredicted RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 CHST15Q7LFX5 561 aaPredicted RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 TMEM139Q8IV31 216 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 SLC37A2Q8TED4 501 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 GLYATL1Q969I3 302 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 HAUS1Q96CS2 278 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 NAF1Q96HR8 494 aaKnown RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 FCRL3Q96P31 734 aaPredicted RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 BBC3Q96PG8 261 aaPredicted RBP19.19■□□□□ 0.66
USP40-207ENST00000450940 SEMA6CQ9H3T2 930 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 PRKAB1Q9Y478 270 aa19.19■□□□□ 0.66
USP40-207ENST00000450940 IGHV1OR21-1A0A087WYE8 117 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 NVLO15381 856 aaKnown RBP19.18■□□□□ 0.66
USP40-207ENST00000450940 GRID2O43424 1007 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 SLC25A14O95258 325 aaPredicted RBP19.18■□□□□ 0.66
USP40-207ENST00000450940 ZNF8P17098 575 aaPredicted RBP19.18■□□□□ 0.66
USP40-207ENST00000450940 MPP3Q13368 585 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 SIRPB2Q5JXA9 342 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 BROXQ5VW32 411 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 ALS2CLQ60I27 953 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 IYDQ6PHW0 289 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 GPR155Q7Z3F1 870 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 ADGRG6Q86SQ4 1221 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 TTC30BQ8N4P2 665 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 SNRNP27Q8WVK2 155 aaKnown RBP19.18■□□□□ 0.66
USP40-207ENST00000450940 VPS35Q96QK1 796 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 UBL7Q96S82 380 aaPredicted RBP19.18■□□□□ 0.66
USP40-207ENST00000450940 DPYSL5Q9BPU6 564 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 OSBPL8Q9BZF1 889 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 B3GNT4Q9C0J1 378 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 RDH14Q9HBH5 336 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 HACD3Q9P035 362 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 TBC1D29Q9UFV1 150 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 LOXL2Q9Y4K0 774 aa19.18■□□□□ 0.66
USP40-207ENST00000450940 KLK10O43240 276 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 RBL1P28749 1068 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 SLC5A2P31639 672 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 RWDD2BP57060 319 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 CFHR1Q03591 330 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 BIRC2Q13490 618 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 SLC1A5Q15758 541 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 AMZ1Q400G9 498 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 MAP9Q49MG5 647 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 USP53Q70EK8 1073 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 ACRBPQ8NEB7 543 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 ACTL9Q8TC94 416 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 ALG3Q92685 438 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 CMKLR1Q99788 373 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 BAG1Q99933 345 aaPredicted RBP19.17■□□□□ 0.66
USP40-207ENST00000450940 NUDT22Q9BRQ3 303 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 OR2AG1Q9H205 316 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 SARS2Q9NP81 518 aaKnown RBP19.17■□□□□ 0.66
USP40-207ENST00000450940 IL17CQ9P0M4 197 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 PDP2Q9P2J9 529 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 TMPRSS11EQ9UL52 423 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 AHCTF1Q8WYP5 2266 aa19.17■□□□□ 0.66
USP40-207ENST00000450940 ATRXP46100 2492 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 IGHV5-10-1A0A0J9YXX1 117 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 TEX51A0A1B0GUA7 166 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 GRID2IPA4D2P6 1211 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 PRR19A6NJB7 356 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 HGSO14964 777 aaPredicted RBP19.16■□□□□ 0.66
USP40-207ENST00000450940 JMJD7P0C870 316 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 ACP5P13686 325 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 HGFP14210 728 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 HLA-DPA1P20036 260 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 CHRNA4P43681 627 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 LIMK2P53671 638 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 TMPRSS3P57727 454 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 GPLD1P80108 840 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 OTUD4Q01804 1114 aaKnown RBP19.16■□□□□ 0.66
USP40-207ENST00000450940 TRA2AQ13595 282 aaKnown RBP eCLIP19.16■□□□□ 0.66
USP40-207ENST00000450940 C16orf72Q14CZ0 275 aa19.16■□□□□ 0.66
USP40-207ENST00000450940 ZDHHC20Q5W0Z9 365 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms