RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 LAMB3Q13751 1172 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 PYCR3Q53H96 274 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 GUSBP11Q6P575 273 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 CCDC137Q6PK04 289 aaKnown RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 PPP1R21Q6ZMI0 780 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 NYAP1Q6ZVC0 841 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 CHST15Q7LFX5 561 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 CREG2Q8IUH2 290 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 TAB3Q8N5C8 712 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 PDCD7Q8N8D1 485 aaKnown RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 KYQ8NBH2 561 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 DTX3LQ8TDB6 740 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 ZDHHC1Q8WTX9 485 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 SCARF2Q96GP6 870 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 C16orf45Q96MC5 204 aaPredicted RBP16.22■□□□□ 0.19
SF3A1-204ENST00000447376 DEPDC7Q96QD5 511 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 VPS35Q96QK1 796 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 GORASP1Q9BQQ3 440 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 OR2AG1Q9H205 316 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 ARNT2Q9HBZ2 717 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 TRIM39Q9HCM9 518 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 RAB6BQ9NRW1 208 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 TAAR2Q9P1P5 351 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 CLCA2Q9UQC9 943 aa16.22■□□□□ 0.19
SF3A1-204ENST00000447376 TMEM8BA6NDV4 472 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 GRID2O43424 1007 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 OPA1O60313 960 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 USP12O75317 370 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 MYF5P13349 255 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 VCLP18206 1134 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 CDH17Q12864 832 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 SPARCL1Q14515 664 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 C14orf28Q4W4Y0 310 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 LDLRAP1Q5SW96 308 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 KCTD16Q68DU8 428 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 FAM151BQ6UXP7 276 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 UNQ6494/PRO21346Q6UXR6 183 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 CCNI2Q6ZMN8 369 aaPredicted RBP16.21■□□□□ 0.19
SF3A1-204ENST00000447376 KLHDC8BQ8IXV7 354 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 OR4K2Q8NGD2 314 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 RUNDC3BQ96NL0 473 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 STN1Q9H668 368 aaKnown RBP16.21■□□□□ 0.19
SF3A1-204ENST00000447376 ETNK1Q9HBU6 452 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 SMARCAL1Q9NZC9 954 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 ARL5AQ9Y689 179 aa16.21■□□□□ 0.19
SF3A1-204ENST00000447376 LY6G6EA0A0G2JKS1 128 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 RHPN2P1A8MT19 583 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CCDC188H7C350 402 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 KMOO15229 486 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 BUD23O43709 281 aaKnown RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 NUAK1O60285 661 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CDK14O94921 469 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 ETS1P14921 441 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 GLB1P16278 677 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 AK4P27144 223 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 AKT1P31749 480 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 RPL22P35268 128 aaKnown RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 INSM1Q01101 510 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 SEPT6Q14141 434 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 SPIDRQ14159 915 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 INSCQ1MX18 579 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 LRRTM4Q86VH4 590 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CACTIN-AS1Q8N1I8 211 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CCL4L1Q8NHW4 92 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 C19orf43Q9BQ61 176 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CCDC3Q9BQI4 270 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 IL26Q9NPH9 171 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 CNOT6Q9ULM6 557 aaKnown RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 OAS3Q9Y6K5 1087 aaKnown RBP16.2■□□□□ 0.18
SF3A1-204ENST00000447376 U3KQA8 63 aa16.2■□□□□ 0.18
SF3A1-204ENST00000447376 ARID1BQ8NFD5 2236 aaPredicted RBP16.19■□□□□ 0.18
SF3A1-204ENST00000447376 FAM149AA5PLN7 773 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 AP3B1O00203 1094 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 NUDT21O43809 227 aaKnown RBP16.19■□□□□ 0.18
SF3A1-204ENST00000447376 DNAJC6O75061 913 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 TCEA3O75764 348 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 PRAMEF1O95521 474 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ECEL1O95672 775 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 MT-CO3P00414 261 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 KRT14P02533 472 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 APRTP07741 180 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 RALBP11234 206 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ACP5P13686 325 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ITGALP20701 1170 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 BASP1P80723 227 aaKnown RBP16.19■□□□□ 0.18
SF3A1-204ENST00000447376 OLIG2Q13516 323 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 SEMA5AQ13591 1074 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ATP13A5Q4VNC0 1218 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 KCTD11Q693B1 232 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 OGFOD3Q6PK18 319 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 AVL9Q8NBF6 648 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 GPR156Q8NFN8 814 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ZNF398Q8TD17 642 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 CCDC74AQ96AQ1 378 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ULK4Q96C45 1275 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 CNTNAP3BQ96NU0 1288 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 CNTNAP3Q9BZ76 1288 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ARFGAP3Q9NP61 516 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 LRIT1Q9P2V4 623 aa16.19■□□□□ 0.18
SF3A1-204ENST00000447376 ATXN10Q9UBB4 475 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms