RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RWDD3Q9Y3V2 267 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 PCDHB9Q9Y5E1 797 aa13.49□□□□□ -0.25
LIMS1-205ENST00000410093 TNPO3Q9Y5L0 923 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 COPG1Q9Y678 874 aaKnown RBP13.49□□□□□ -0.25
LIMS1-205ENST00000410093 A0A0J9YYE9 177 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 H0Y3Z8 333 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 GIPC1O14908 333 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 AZIN1O14977 448 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 BUD23O43709 281 aaKnown RBP13.48□□□□□ -0.25
LIMS1-205ENST00000410093 CXCL14O95715 111 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 CHEK2O96017 543 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 TRBC1P01850 177 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 C8AP07357 584 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 MTHFD2P13995 350 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ANPEPP15144 967 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ITGALP20701 1170 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 NFKBIAP25963 317 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 NUDT2P50583 147 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PGGT1BP53609 377 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 EPHA5P54756 1037 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ERVK-21P61565 698 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PEX6Q13608 980 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PTPRCAPQ14761 206 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 SPATS1Q496A3 300 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ARHGAP15Q53QZ3 475 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 GRAMD4Q6IC98 578 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 GAREM2Q75VX8 874 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 SNX20Q7Z614 316 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PLPP6Q8IY26 295 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 DSELQ8IZU8 1212 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 RBFAQ8N0V3 343 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 KREMEN2Q8NCW0 462 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 RIN3Q8TB24 985 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 TSPEARQ8WU66 669 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 C19orf60Q96EN9 201 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 NSMCE3Q96MG7 304 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 CATSPER2Q96P56 530 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 SLC22A12Q96S37 553 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 CPEB1Q9BZB8 566 aaKnown RBP13.48□□□□□ -0.25
LIMS1-205ENST00000410093 P2RY12Q9H244 342 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ZFYVE1Q9HBF4 777 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 S100A14Q9HCY8 104 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 CFAP97Q9P2B7 532 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 THEGQ9P2T0 379 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 GNPTGQ9UJJ9 305 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 POMPQ9Y244 141 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 DHRS7Q9Y394 339 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PPIL1Q9Y3C6 166 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 ACTL7AQ9Y615 435 aa13.48□□□□□ -0.25
LIMS1-205ENST00000410093 PTPRSQ13332 1948 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 SCN8AQ9UQD0 1980 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 MEI4A8MW99 385 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 SUPT3HB4E1H0 165 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 PSMD12O00232 456 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-205ENST00000410093 GRM6O15303 877 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 SUPT3HO75486 399 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 ARHGEF15O94989 841 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 GLUD1P00367 558 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 HOXA9P31269 272 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 HOXD11P31277 338 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-205ENST00000410093 CCR10P46092 362 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 RGS4P49798 205 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 UBE3AQ05086 875 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 PTK2BQ14289 1009 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 OR4D1Q15615 310 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 GSTA3Q16772 222 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 PFKFB4Q16877 469 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 PLEKHG6Q3KR16 790 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 COQ5Q5HYK3 327 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 KANK2Q63ZY3 851 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 TTC23LQ6PF05 361 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 LINGO4Q6UY18 593 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 LARP4Q71RC2 724 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIMS1-205ENST00000410093 ADAMTSL2Q86TH1 951 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 RYBPQ8N488 228 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-205ENST00000410093 OR2AP1Q8NGE2 309 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 OTUB2Q96DC9 234 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 ZNF641Q96N77 438 aaPredicted RBP13.47□□□□□ -0.25
LIMS1-205ENST00000410093 GPR21Q99679 349 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 CLPBQ9H078 707 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 NUDT4Q9NZJ9 180 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 LMCD1Q9NZU5 365 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 TBC1D14Q9P2M4 693 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 DPP7Q9UHL4 492 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 SARDHQ9UL12 918 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 HS3ST2Q9Y278 367 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 LRCH1Q9Y2L9 728 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 MED16Q9Y2X0 877 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 MTCH2Q9Y6C9 303 aa13.47□□□□□ -0.25
LIMS1-205ENST00000410093 EYSQ5T1H1 3165 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 TRBV5-4A0A0C4DH59 114 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 CAPN8A6NHC0 703 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 LEFTY2O00292 366 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 EIF3FO00303 357 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-205ENST00000410093 AIM2O14862 343 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 SNX2O60749 519 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 CLASP2O75122 1294 aaKnown RBP13.46□□□□□ -0.25
LIMS1-205ENST00000410093 RPS17P08708 135 aaKnown RBP13.46□□□□□ -0.25
LIMS1-205ENST00000410093 TCF3P15923 654 aa13.46□□□□□ -0.25
LIMS1-205ENST00000410093 POU3F3P20264 500 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms