RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NRG1Q02297 640 aaPredicted RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 CLCQ05315 142 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 SLC22A9Q8IVM8 553 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 DCP1BQ8IZD4 617 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 NPLOC4Q8TAT6 608 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 SMARCD1Q96GM5 515 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 WARS2Q9UGM6 360 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 ANAPC2Q9UJX6 822 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 RBMX2Q9Y388 322 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 IREB2P48200 963 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 DUSP28Q4G0W2 176 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 HACD2Q6Y1H2 254 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 SYVN1Q86TM6 617 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 CROCCP3Q8IVE0 287 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 ADAMTS16Q8TE57 1224 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 SLC22A17Q8WUG5 538 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 CCDC126Q96EE4 140 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 L3HYPDHQ96EM0 354 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 HOPXQ9BPY8 73 aaPredicted RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 U3KQV3 271 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 WISP3O95389 354 aaPredicted RBP20.84■□□□□ 0.93
CTCF-202ENST00000401394 PIK3CGP48736 1102 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 AIF1P55008 147 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 NKG7Q16617 165 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 TMTC4Q5T4D3 741 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 GRAMD4Q6IC98 578 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 SCD5Q86SK9 330 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 IGFN1Q86VF2 1251 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 BORCS5Q969J3 196 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 TMBIM1Q969X1 311 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 EXOC2Q96KP1 924 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 ING2Q9H160 280 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 SP110Q9HB58 689 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 ZSWIM8A7E2V4 1837 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 TRIM43BA6NCK2 446 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 NPEPPSL1A6NEC2 478 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 TRIM64A6NGJ6 449 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 LDLRP01130 860 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 ZNF37AP17032 561 aaPredicted RBP20.84■□□□□ 0.93
CTCF-202ENST00000401394 OPRL1P41146 370 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 YWHAHQ04917 246 aaPredicted RBP20.84■□□□□ 0.93
CTCF-202ENST00000401394 SCN4BQ8IWT1 228 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 CLEC4FQ8N1N0 589 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 DTWD1Q8N5C7 304 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 CDYL2Q8N8U2 506 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 OR52B6Q8NGF0 335 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 FBXO30Q8TB52 745 aa20.84■□□□□ 0.93
CTCF-202ENST00000401394 UPK1AO00322 258 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 HTR1AP08908 422 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 PORP16435 677 aaPredicted RBP20.83■□□□□ 0.93
CTCF-202ENST00000401394 CCNA2P20248 432 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 ADARB1P78563 741 aaKnown RBP20.83■□□□□ 0.93
CTCF-202ENST00000401394 CARTPTQ16568 116 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 KANK2Q63ZY3 851 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 ENPP6Q6UWR7 440 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 ZNF408Q9H9D4 720 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 POLE4Q9NR33 117 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 PCDHGA8Q9Y5G5 932 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 PCDHGA11Q9Y5H2 935 aa20.83■□□□□ 0.93
CTCF-202ENST00000401394 A0A1W2PQH9 124 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 A8MU76 341 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 ZNF189O75820 626 aaPredicted RBP20.83■□□□□ 0.92
CTCF-202ENST00000401394 CYBBP04839 570 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 BCAP31P51572 246 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 PLA2G16P53816 162 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 SETMARQ53H47 684 aaPredicted RBP20.83■□□□□ 0.92
CTCF-202ENST00000401394 KLHDC8BQ8IXV7 354 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 GPRC5AQ8NFJ5 357 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 SDCCAG3Q96C92 435 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 NSMCE3Q96MG7 304 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 ATOH8Q96SQ7 321 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 ALOXE3Q9BYJ1 711 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 VTA1Q9NP79 307 aa20.83■□□□□ 0.92
CTCF-202ENST00000401394 TMEM221A6NGB7 291 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 IQCF5A8MTL0 148 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 NFKBIAP25963 317 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 TGFBR1P36897 503 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 ACVRL1P37023 503 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 HTR6P50406 440 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 DPY19L1Q2PZI1 675 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 GLYATQ6IB77 296 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 RBM23Q86U06 439 aaKnown RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 OR13F1Q8NGS4 319 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 DOK1Q99704 481 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 TBCDQ9BTW9 1192 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 MED16Q9Y2X0 877 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 CCDC154A6NI56 674 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 PSMD3O43242 534 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 OR1I1O60431 355 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 ECI2O75521 394 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 SOAT2O75908 522 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 ALBP02768 609 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 SLC2A3P11169 496 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 BMP1P13497 986 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 KCNK10P57789 538 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 CTU2Q2VPK5 515 aaKnown RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 SMYD5Q6GMV2 418 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 IMP4Q96G21 291 aaKnown RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 RHNO1Q9BSD3 238 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 ZBED2Q9BTP6 218 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms