RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 OR5H6Q8NGV6 325 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 TNIP3Q96KP6 325 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PEBP4Q96S96 227 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 TBL1YQ9BQ87 522 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ST6GALNAC4Q9H4F1 302 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 THG1LQ9NWX6 298 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PDP1Q9P0J1 537 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 N6AMT1Q9Y5N5 214 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 LRRC37A3O60309 1634 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 C2CD4BA6NLJ0 364 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 MEN1O00255 615 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 NPHS1O60500 1241 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 UGT2B11O75310 529 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 RPLP0P05388 317 aaKnown RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CCR1P32246 355 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 RFC2P35250 354 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PFKPQ01813 784 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ADIGQ0VDE8 80 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 VPS72Q15906 364 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 BTBD16Q32M84 506 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 INAVAQ3KP66 663 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CNSTQ6PJW8 725 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 DPY19L3Q6ZPD9 716 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SZRD1Q7Z422 152 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 RIOX2Q8IUF8 465 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SPERTQ8NA61 448 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SPPL2BQ8TCT7 592 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CENPIQ92674 756 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 FAM167AQ96KS9 214 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 LATS2Q9NRM7 1088 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PRKAB1Q9Y478 270 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 MAGED1Q9Y5V3 778 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 COL1A1P02452 1464 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 UBXN8O00124 270 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 KMOO15229 486 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 BMP4P12644 408 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 AGXTP21549 392 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CLCN3P51790 818 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 GRM1Q13255 1194 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ARHGEF6Q15052 776 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF362Q5T0B9 420 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 FAM117BQ6P1L5 589 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 SLC39A4Q6P5W5 647 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PIGZQ86VD9 579 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 PQLC3Q8N755 202 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 TOR1AIP2Q8NFQ8 470 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ZUFSPQ96AP4 578 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 MMP27Q9H306 513 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 NANOGQ9H9S0 305 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 CYP3A43Q9HB55 503 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF624Q9P2J8 865 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-201ENST00000399429 TRHDEQ9UKU6 1024 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 GJA3Q9Y6H8 435 aa9.26□□□□□ -0.93
COL28A1-201ENST00000399429 BTN3A1O00481 513 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 HAT1O14929 419 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 GRID2O43424 1007 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 VPS4BO75351 444 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TULP3O75386 442 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 UPK1BO75841 260 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 NFICP08651 508 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RPS3AP61247 264 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SELENBP1Q13228 472 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 NCF4Q15080 339 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF181Q2M3W8 571 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ESRP1Q6NXG1 681 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RASSF6Q6ZTQ3 369 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TTC29Q8NA56 475 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ADAMTS16Q8TE57 1224 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SNAPC3Q92966 411 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 MASTLQ96GX5 879 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TRMOQ9BU70 441 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CNPPD1Q9BV87 410 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 FTHL17Q9BXU8 183 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ABCG8Q9H221 673 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SNTG1Q9NSN8 517 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 DNAJB9Q9UBS3 223 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 MALT1Q9UDY8 824 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 STOML2Q9UJZ1 356 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PCDHAC2Q9Y5I4 1007 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SOBPA7XYQ1 873 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 LACTBL1A8MY62 500 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 H0YAE9 185 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 NME4O00746 187 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ACOT8O14734 319 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PLD2O14939 933 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PLA2G6O60733 806 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SEC22BO75396 215 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SIX3O95343 332 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CYP11A1P05108 521 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 YBX3P16989 372 aaKnown RBP eCLIP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CYP3A5P20815 502 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TIE1P35590 1138 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 KRT20P35900 424 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 DPP6P42658 865 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CTSKP43235 329 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 LEPRP48357 1165 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TUBB3Q13509 450 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RAB6CQ53S08 254 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 IER5Q5VY09 327 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms