RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 UBTFL6P0CB48 400 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CTHP32929 405 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 RGRP47804 291 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 DGKKQ5KSL6 1271 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 MSANTD2Q6P1R3 559 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 Q6ZS52 159 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF75CPQ92670 426 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 OTUB2Q96DC9 234 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CENPKQ9BS16 269 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ATG10Q9H0Y0 220 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 IL21Q9HBE4 155 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 VPS45Q9NRW7 570 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PPARGC1AQ9UBK2 798 aaKnown RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 EIF2B4Q9UI10 523 aaKnown RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 APPL1Q9UKG1 709 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SIT1Q9Y3P8 196 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 DOCK6Q96HP0 2047 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 BCLAF3A2AJT9 711 aaKnown RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 B4DGG1 531 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SOX1O00570 391 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 KDELR3O43731 214 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PSMG1O95456 288 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 GOT2P00505 430 aaKnown RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ASLP04424 464 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ABHD2P08910 425 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SRCP12931 536 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 GM2AP17900 193 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 RPA3P35244 121 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 GP5P40197 560 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 IL12RB1P42701 662 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SH3BGRP55822 239 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ELP6Q0PNE2 266 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SIX1Q15475 284 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CHRNA6Q15825 494 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CRY1Q16526 586 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 BEND7Q8N7W2 519 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 VN1R2Q8NFZ6 395 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SLC35B2Q8TB61 432 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 C10orf82Q8WW14 230 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 DRC3Q9H069 523 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PCDH12Q9NPG4 1184 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 HEY2Q9UBP5 337 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CHADO15335 359 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PRSS56P0CW18 603 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 MYL2P10916 166 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 HOXD9P28356 352 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PGM1P36871 562 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CDH13P55290 713 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PFKFB4Q16877 469 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PPM1JQ5JR12 505 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SERPINA9Q86WD7 417 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CRLF3Q8IUI8 442 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 RAVER1Q8IY67 606 aaKnown RBP10.25□□□□□ -0.77
COL6A3-205ENST00000392004 NXPE3Q969Y0 559 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ACTR8Q9H981 624 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 COMMD8Q9NX08 183 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 SCN10AQ9Y5Y9 1956 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 CCDC162PA2VCL2 907 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 WNT9AO14904 365 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 SLC35G4P0C7Q5 338 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PCNAP12004 261 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CXCL12P48061 93 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PIK3CGP48736 1102 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 NKX3-2P78367 333 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PDPK2PQ6A1A2 396 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CLNKQ7Z7G1 428 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ZCCHC9Q8N567 271 aaKnown RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PCDH20Q8N6Y1 951 aaKnown RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 JPH3Q8WXH2 748 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 EZH1Q92800 747 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 FERD3LQ96RJ6 166 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 HBEGFQ99075 208 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CCDC3Q9BQI4 270 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 TTYH1Q9H313 450 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 A8MU76 341 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 MAFKO60675 156 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 RECQL5O94762 991 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 EGFP01133 1207 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 STATHP02808 62 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 NIPAL4Q0D2K0 466 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 GALNT2Q10471 571 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 SEMA5AQ13591 1074 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 DMC1Q14565 340 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ELAVL3Q14576 367 aaKnown RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CHI3L2Q15782 390 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PKN3Q6P5Z2 889 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 SLC44A3Q8N4M1 653 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 KCTD4Q8WVF5 259 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PRICKLE1Q96MT3 831 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PPCSQ9HAB8 311 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 GOLGA8QA0A0J9YX86 632 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 GOLGA8OA6NCC3 632 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ANTXRLA6NF34 631 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 GOLGA8NF8WBI6 632 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 FPGTO14772 594 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 TIMM44O43615 452 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ATG13O75143 517 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 T-ENOLP0DO92 83 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 TRAF2Q12933 501 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ITGA9Q13797 1035 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms