RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 ZNF772Q68DY9 489 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PMF1Q6P1K2 205 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 XKRXQ6PP77 449 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TSPEARQ8WU66 669 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 HDAC2Q92769 488 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SEPT5Q99719 369 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 HNRNPABQ99729 332 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ULBP1Q9BZM6 244 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MRM3Q9HC36 420 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PRELID1Q9Y255 219 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 H0Y858 1186 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 GSTM1P09488 218 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ZNF286BP0CG31 522 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 COX7A2P14406 83 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 STAT5AP42229 794 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PHC1P78364 1004 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 IL18Q14116 193 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TXNRD3NBQ6F5E7 133 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 KLHL35Q6PF15 583 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 FBXO16Q8IX29 292 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 BCO2Q9BYV7 579 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 KCNK13Q9HB14 408 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ARL15Q9NXU5 204 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 DDX60LQ5H9U9 1706 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SUV39H1O43463 412 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CHST10O43529 356 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SCELO95171 688 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CDK4P11802 303 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CKMT2P17540 419 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 UBA1P22314 1058 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SDC2P34741 201 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 RHOAP61586 193 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TEAD4Q15561 434 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 NDUFAF6Q330K2 333 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TIGD2Q4W5G0 525 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ZNF517Q6ZMY9 492 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SIX5Q8N196 739 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CERS5Q8N5B7 392 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 NUSAP1Q9BXS6 441 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 RASSF1Q9NS23 344 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MRPL39Q9NYK5 338 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 KCNH4Q9UQ05 1017 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MYF6P23409 242 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SMIM11AP58511 58 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ERVK-8P63133 956 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PRKCQQ04759 706 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 LCN1P1Q5VSP4 162 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 C11orf88Q6PI97 169 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CDK20Q8IZL9 346 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 NSMCE3Q96MG7 304 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SLC38A2Q96QD8 506 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SH3BP1Q9Y3L3 701 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TCAF1Q9Y4C2 921 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CDK5RAP2Q96SN8 1893 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TCF4P15884 667 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ARL2P36404 184 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 BLVRAP53004 296 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CDH18Q13634 790 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ZSWIM7Q19AV6 140 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 RBM20Q5T481 1227 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PAOXQ6QHF9 649 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CPNE8Q86YQ8 564 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 CCDC185Q8N715 623 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 OR5K1Q8NHB7 308 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MRPL45Q9BRJ2 306 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MMP27Q9H306 513 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 LRTM1Q9HBL6 345 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ARHGEF4Q9NR80 690 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PAPPAQ13219 1627 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 MARF1Q9Y4F3 1742 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PSMD11O00231 422 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SCNN1AP37088 669 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 GRIA2P42262 883 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SLC15A1P46059 708 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 SPIBQ01892 262 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TTC29Q8NA56 475 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 IL31RAQ8NI17 732 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TFAP2BQ92481 460 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TEFMQ96QE5 360 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TMEM209Q96SK2 561 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 KAT8Q9H7Z6 458 aaKnown RBP4.76□□□□□ -1.65
CSMD3-203ENST00000343508 AKTIPQ9H8T0 292 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 KLHL28Q9NXS3 571 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 TRPM5Q9NZQ8 1165 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 ATP6V1HQ9UI12 483 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 B3GNT3Q9Y2A9 372 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 PCDHB1Q9Y5F3 818 aa4.76□□□□□ -1.65
CSMD3-203ENST00000343508 FAM172BPA6NC97 362 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 CD36P16671 472 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 POLR2LP62875 67 aaKnown RBP4.75□□□□□ -1.65
CSMD3-203ENST00000343508 TMEM214Q6NUQ4 689 aaKnown RBP4.75□□□□□ -1.65
CSMD3-203ENST00000343508 GPRC5AQ8NFJ5 357 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 FAM84AQ96KN4 292 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 SPATA17Q96L03 361 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 VPS35Q96QK1 796 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 TNRC6CQ9HCJ0 1690 aaKnown RBP4.75□□□□□ -1.65
CSMD3-203ENST00000343508 ZNF460Q14592 562 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 TGFBIQ15582 683 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 MIB1Q86YT6 1006 aa4.75□□□□□ -1.65
CSMD3-203ENST00000343508 EPHX4Q8IUS5 362 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms