RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF839A8K0R7 811 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SNX2O60749 519 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 VPS26AO75436 327 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 NELFEP18615 380 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CA5AP35218 305 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 POLE2P56282 527 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SMARCB1Q12824 385 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 LRRC73Q5JTD7 316 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CTSL3PQ5NE16 218 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ANKS6Q68DC2 871 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 LRTOMTQ8WZ04 291 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 EID2BQ96D98 161 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 BOCQ9BWV1 1114 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ADGRE3Q9BY15 652 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 RNF208Q9H0X6 261 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ZNF334Q9HCZ1 680 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 POLG2Q9UHN1 485 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 VPS51Q9UID3 782 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 APPL1Q9UKG1 709 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SNX13Q9Y5W8 968 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CPQQ9Y646 472 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ACOT8O14734 319 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 BCAS2O75934 225 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PGM3O95394 542 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 UGT1A6P19224 532 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 UGT1A1P22309 533 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 UGT1A4P22310 534 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ADSLP30566 484 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 UGT1A3P35503 534 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 UGT1A5P35504 534 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PIK3CGP48736 1102 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TLE2Q04725 743 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 VEPH1Q14D04 833 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PDK3Q15120 406 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TLR1Q15399 786 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TYSND1Q2T9J0 566 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 KIAA1191Q96A73 305 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 HHIPL1Q96JK4 782 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TMEM175Q9BSA9 504 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 FEM1AQ9BSK4 669 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 HGH1Q9BTY7 390 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SLC25A23Q9BV35 468 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CWH43Q9H720 699 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 V9GYQ6 96 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PEX1O43933 1283 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 KERAO60938 352 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TRIM16O95361 564 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 F11P03951 625 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CAPN3P20807 821 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 HK3P52790 923 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CREB5Q02930 508 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 LAMB3Q13751 1172 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ADGRE1Q14246 886 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TRIM25Q14258 630 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 MAPRE2Q15555 327 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 RARS2Q5T160 578 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 IYDQ6PHW0 289 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 GALNT7Q86SF2 657 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SYVN1Q86TM6 617 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SLAIN1Q8ND83 568 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PDZD8Q8NEN9 1154 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 OR52B6Q8NGF0 335 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PIP4K2CQ8TBX8 421 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 DIS3LQ8TF46 1054 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 C2orf15Q8WU43 125 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 PLD4Q96BZ4 506 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 CDK5RAP1Q96SZ6 601 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TRMOQ9BU70 441 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 APOL5Q9BWW9 433 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 KLF16Q9BXK1 252 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 TFB2MQ9H5Q4 396 aaKnown RBP10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SPAG4Q9NPE6 437 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 EPS15L1Q9UBC2 864 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 AURKCQ9UQB9 309 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 SLC30A1Q9Y6M5 507 aa10.27□□□□□ -0.77
LIMA1-201ENST00000341247 ANGPT2O15123 496 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 SLC22A2O15244 555 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 OR4F21O95013 312 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 CKMP06732 381 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 PYGLP06737 847 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 GRIA3P42263 894 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 INHBCP55103 352 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 TNK2Q07912 1038 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 TRIM60Q495X7 471 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 MFN1Q8IWA4 741 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 DNAJB14Q8TBM8 379 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 EME1Q96AY2 570 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 TEX37Q96LM6 180 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 INTS10Q9NVR2 710 aaKnown RBP10.26□□□□□ -0.77
LIMA1-201ENST00000341247 ATP11BQ9Y2G3 1177 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 PKP3Q9Y446 797 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 GIPC1O14908 333 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 HSPA1AP0DMV8 641 aaKnown RBP10.26□□□□□ -0.77
LIMA1-201ENST00000341247 HSPA1BP0DMV9 641 aaKnown RBP10.26□□□□□ -0.77
LIMA1-201ENST00000341247 GPX3P22352 226 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 MNX1P50219 401 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-201ENST00000341247 IL2P60568 153 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 LCP2Q13094 533 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 OGFRL1Q5TC84 451 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-201ENST00000341247 GPSM1Q86YR5 675 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms