RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PCDHB10Q9UN67 800 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SMG5Q9UPR3 1016 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 A8MXE2 369 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 F8W036 122 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 H7C1D1 291 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC28A2O43868 658 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SOAT2O75908 522 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SFTPBP07988 381 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GSTT2BP0CG30 244 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 NR2F1P10589 423 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GJA5P36382 358 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB13P51153 203 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CORO7P57737 925 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MCL1Q07820 350 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ARL16Q0P5N6 197 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PTGES3Q15185 160 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MAN2A1Q16706 1144 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ALG11Q2TAA5 492 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MFSD7Q6UXD7 560 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ADGRG2Q8IZP9 1017 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 C11orf42Q8N5U0 333 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 M1APQ8TC57 530 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RAD54LQ92698 747 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SDSLQ96GA7 329 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MCCC1Q96RQ3 725 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ELF4Q99607 663 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ZDHHC5Q9C0B5 715 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ADAM19Q9H013 955 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MUC3BQ9H195 1237 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TRPS1Q9UHF7 1281 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ACEP12821 1306 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 MAGI3Q5TCQ9 1506 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PRAMEF12O95522 483 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PTPRAP18433 802 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CCNOP22674 350 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ADORA2BP29275 332 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TKTP29401 623 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GLRBP48167 497 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PSMA6P60900 246 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CCNA1P78396 465 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GNA13Q14344 377 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PTCHD3Q3KNS1 767 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF791Q3KP31 576 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TRIM61Q5EBN2 209 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GGNBP1Q5YKI7 109 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TNFAIP8L2Q6P589 184 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PI16Q6UXB8 463 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 OR4N5Q8IXE1 308 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM47BQ8NA70 645 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PSD4Q8NDX1 1056 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SCLYQ96I15 445 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RNF170Q96K19 258 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 BTBD2Q9BX70 525 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SUCNR1Q9BXA5 334 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ZNF286AQ9HBT8 521 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TMEM248Q9NWD8 314 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PPP1R3CQ9UQK1 317 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TEX13DA0A0J9YY54 714 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 M0QX08 132 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TGM1P22735 817 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 HMGB2P26583 209 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SLC7A2P52569 658 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PPP3R1P63098 170 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TNK2Q07912 1038 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 FRG1Q14331 258 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 C14orf28Q4W4Y0 310 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 KCNT2Q6UVM3 1135 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PTCHD4Q6ZW05 846 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 KATNAL2Q8IYT4 538 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 FAM103A1Q9BTL3 118 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 C9orf16Q9BUW7 83 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ANKRD60Q9BZ19 345 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TFB2MQ9H5Q4 396 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CD93Q9NPY3 652 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 KMT5AQ9NQR1 393 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 TAGLN3Q9UI15 199 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 GJD2Q9UKL4 321 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 FBXL21Q9UKT6 434 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 NDUFB9Q9Y6M9 179 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 NSD3Q9BZ95 1437 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 C17orf113A0A1B0GUU1 675 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 OOEPA6NGQ2 149 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 M0R233 179 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CREBL2O60519 120 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RDH16O75452 317 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CYB5AP00167 134 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RPLP0P05388 317 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CYP3A4P08684 503 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 LEPRP48357 1165 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SULT1A2P50226 295 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 P2RX1P51575 399 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 RAB11BQ15907 218 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 OR13C3Q8NGS6 347 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 NACC1Q96RE7 527 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 CDCA7Q9BWT1 371 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 SDHAF2Q9NX18 166 aa7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 PUS1Q9Y606 427 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMCH1-201ENST00000313860 OR2M5A3KFT3 312 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms