RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 GSC2O15499 205 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 KRT33AO76009 404 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 RECQL4O94761 1208 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 LINC00032P0C843 101 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ABCG1P45844 678 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 S100A12P80511 92 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 SETMARQ53H47 684 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OGFRL1Q5TC84 451 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 C16orf46Q6P387 395 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 CPT1BQ92523 772 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 FATE1Q969F0 183 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NXNL1Q96CM4 212 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 CDT1Q9H211 546 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 IKZF4Q9H2S9 585 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 HPF1Q9NWY4 346 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 MAFFQ9ULX9 164 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ZBTB14O43829 449 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 RSL1D1O76021 490 aaKnown RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 USP17L7P0C7H9 530 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 POLR2EP19388 210 aaKnown RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 CTSKP43235 329 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NFE2Q16621 373 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 INSCQ1MX18 579 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ATCAYQ86WG3 371 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 TNS4Q8IZW8 715 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ART5Q96L15 291 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PPP3R2Q96LZ3 170 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 GLIS2Q9BZE0 524 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NKIRAS2Q9NYR9 191 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OR12D3Q9UGF7 316 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NDOR1Q9UHB4 597 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PSMD13Q9UNM6 376 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 USP12O75317 370 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NR2F6P10588 404 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 TBX4P57082 545 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 RAB10P61026 200 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PIWIL4Q7Z3Z4 852 aaKnown RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PQLC1Q8N2U9 271 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF285Q96NJ3 590 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 MUC13Q9H3R2 512 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PRDM8Q9NQV8 689 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ADAMTS3O15072 1205 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PRDX6P30041 224 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 CRADDP78560 199 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ARMC10Q8N2F6 343 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 NIPA2Q8N8Q9 360 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 BANPQ8N9N5 519 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 UCKL1Q9NWZ5 548 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 DERAQ9Y315 318 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 TLX1P31314 330 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 MATKP42679 507 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 EPHB3P54753 998 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 MADCAM1Q13477 382 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OR10H1Q9Y4A9 318 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 FADS3Q9Y5Q0 445 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OR2AT4A6NND4 320 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 TRAFD1O14545 582 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 CILPO75339 1184 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 IGFBP5P24593 272 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 GNASQ5JWF2 1037 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ZDHHC24Q6UX98 284 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 ZZZ3Q8IYH5 903 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 SLC34A3Q8N130 599 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OR2T34Q8NGX1 318 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 OR2T3Q8NH03 318 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 LENG9Q96B70 501 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 MKLN1Q9UL63 735 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 GNEQ9Y223 722 aaKnown RBP9.82□□□□□ -0.84
COL6A3-201ENST00000295550 PEX16Q9Y5Y5 336 aa9.82□□□□□ -0.84
COL6A3-201ENST00000295550 HDAC3O15379 428 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 OR10H2O60403 315 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 CYP2A6P11509 494 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 PSKH1P11801 424 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 NFKB1P19838 968 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 RPL38P63173 70 aaKnown RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 ZNF234Q14588 700 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 MFSD10Q14728 455 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SLITRK4Q8IW52 837 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SPERTQ8NA61 448 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 ZFP28Q8NHY6 868 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 MRPS31Q92665 395 aaKnown RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 P2RX7Q99572 595 aaKnown RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 PCDHAC2Q9Y5I4 1007 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SIN3BO75182 1162 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 GCATO75600 419 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SGCGQ13326 291 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 TUBGCP5Q96RT8 1024 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 ACE2Q9BYF1 805 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 UPB1Q9UBR1 384 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 BCORQ6W2J9 1755 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 TRIM64CA6NLI5 447 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 LYPLA1O75608 230 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SLC22A3O75751 556 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 YBX3P16989 372 aaKnown RBP eCLIP9.81□□□□□ -0.84
COL6A3-201ENST00000295550 DGKAP23743 735 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 EPHA3P29320 983 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 SLC1A5Q15758 541 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 TRIM40Q6P9F5 258 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 C10orf107Q8IVU9 208 aa9.81□□□□□ -0.84
COL6A3-201ENST00000295550 ADAM32Q8TC27 787 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms