RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PRMT5O14744 637 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OIP5O43482 229 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PQBP1O60828 265 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 POLBP06746 335 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NPIPA8P0DM63 369 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CALB2P22676 271 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RPS3P23396 243 aaKnown RBP eCLIP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BUD31P41223 144 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RAB28P51157 221 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PTP4A2Q12974 167 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NME3Q13232 169 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GCKRQ14397 625 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CDK10Q15131 360 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC9B1Q4ZJI4 515 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KDM4DQ6B0I6 523 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BEND4Q6ZU67 534 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SMIM5Q71RC9 77 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C7orf61Q8IZ16 206 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AGR3Q8TD06 166 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DIO2Q92813 273 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GPER1Q99527 375 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 THAP9Q9H5L6 903 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HPF1Q9NWY4 346 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 COMMD8Q9NX08 183 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MTMR4Q9NYA4 1195 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AMACRQ9UHK6 382 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHB10Q9UN67 800 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ST14Q9Y5Y6 855 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C2orf16Q68DN1 1984 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FAM172BPA6NC97 362 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ARL5CA6NH57 179 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NR5A2O00482 541 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CDK2AP1O14519 115 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FLRT2O43155 660 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CCNT2O60583 730 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ENTPD3O75355 529 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 B3GALNT1O75752 331 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DGAT1O75907 488 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SOX30O94993 753 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 USP17L7P0C7H9 530 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NCK1P16333 377 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CPEP16870 476 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MZF1P28698 734 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RAPSNQ13702 412 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PLGLAQ15195 96 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C2orf27AQ580R0 203 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TTC39BQ5VTQ0 682 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RTL4Q6ZR62 310 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GPC2Q8N158 579 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KYQ8NBH2 561 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NAXEQ8NCW5 288 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 EZH1Q92800 747 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SNAPC3Q92966 411 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RCN3Q96D15 328 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NUAK2Q9H093 628 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ACSS1Q9NUB1 689 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ERVW-1Q9UQF0 538 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PMF1-BGLAPU3KQ54 211 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ARHGEF5Q12774 1597 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PDHXO00330 501 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CXCL11O14625 94 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GSC2O15499 205 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ADAMTS4O75173 837 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF682O95780 498 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TNFP01375 233 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ITGA2P17301 1181 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 STIP1P31948 543 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HCAR3P49019 387 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DHPSP49366 369 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ARFIP1P53367 373 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MAZP56270 477 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IL5RAQ01344 420 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ITGA7Q13683 1181 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DPYSQ14117 519 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ALKBH2Q6NS38 261 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LYPD8Q6UX82 237 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CIR1Q86X95 450 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RASAL3Q86YV0 1011 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GMCL1P1Q8NEA9 526 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OR8H1Q8NGG4 311 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OR6P1Q8NGX9 317 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DCAF4Q8WV16 495 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IP6K1Q92551 441 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C5orf34Q96MH7 638 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SFXN2Q96NB2 322 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BPIFA3Q9BQP9 254 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM246Q9BRR3 403 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GTPBP2Q9BX10 602 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TDRD1Q9BXT4 1180 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C14orf93Q9H972 538 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GFOD1Q9NXC2 390 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 COG5Q9UP83 839 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ANK1P16157 1881 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 USP9XQ93008 2570 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HEG1Q9ULI3 1381 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ABCC4O15439 1325 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AFF2P51816 1311 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 UNCXA6NJT0 531 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OGTO15294 1046 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RHOCP08134 193 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms