RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PEX6Q13608 980 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 SEPT6Q14141 434 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PRPSAP1Q14558 356 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CCDC157Q569K6 752 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CCDC70Q6NSX1 233 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 MPP5Q8N3R9 675 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 OR56A4Q8NGH8 313 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 ATL2Q8NHH9 583 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CCHCR1Q8TD31 782 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CPT1BQ92523 772 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 COX14Q96I36 57 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 WDR92Q96MX6 357 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 FRMD8Q9BZ67 464 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 LRRC40Q9H9A6 602 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PKD2L2Q9NZM6 624 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PAK5Q9P286 719 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 KLQ9UEF7 1012 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 U3KQA8 63 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 COL5A1P20908 1838 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 ANKRD12Q6UB98 2062 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PRSS38A1L453 326 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 SIGLEC6O43699 453 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PCDHGA12O60330 932 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 BANF1O75531 89 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 SESN2P58004 480 aaPredicted RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 XIAPP98170 497 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PPARDQ03181 441 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 C2orf54Q08AI8 447 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PPM1JQ5JR12 505 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CES3Q6UWW8 571 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 SLCO6A1Q86UG4 719 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 NRROSQ86YC3 692 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 PATE1Q8WXA2 126 aa13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CARS2Q9HA77 564 aaKnown RBP13.39□□□□□ -0.27
LINC00540-202ENST00000616974 CES2O00748 559 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 SUN1O94901 812 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 RASGRP1O95267 797 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 EML2O95834 649 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 MSNP26038 577 aaKnown RBP13.38□□□□□ -0.27
LINC00540-202ENST00000616974 GNPDA1P46926 289 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 KIAA1024LP59773 190 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 KCNJ11Q14654 390 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 ADAMTSL4Q6UY14 1074 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 UBE2Q2Q8WVN8 375 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 MAIP1Q8WWC4 291 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 OR2AG1Q9H205 316 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 IL1RAPL1Q9NZN1 696 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 ATXN10Q9UBB4 475 aa13.38□□□□□ -0.27
LINC00540-202ENST00000616974 MED19A0JLT2 244 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 E7EVH7 732 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 CACNB4O00305 520 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 TP73O15350 636 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 YY2O15391 372 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 TTI1O43156 1089 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 AQP9O43315 295 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF883P0CG24 379 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF8P17098 575 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SPINK2P20155 84 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 CASQ1P31415 396 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 PLA2G4EQ3MJ16 856 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 CAND1Q86VP6 1230 aaKnown RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZSCAN30Q86W11 494 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 NRSN1Q8IZ57 195 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 DNAAF3Q8N9W5 541 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 OR13J1Q8NGT2 312 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 BRSK1Q8TDC3 778 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF592Q92610 1267 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SKA1Q96BD8 255 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 HIC2Q96JB3 615 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 CASS4Q9NQ75 786 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 CHRAC1Q9NRG0 131 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SIRPGQ9P1W8 387 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 AHCTF1Q8WYP5 2266 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ITPR1Q14643 2758 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 FOXD2O60548 495 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 DNAJC6O75061 913 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 IVDP26440 423 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 FDFT1P37268 417 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 LMAN1P49257 510 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SIM1P81133 766 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 TAF1AQ15573 450 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF765Q7L2R6 523 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 ZNF547Q8IVP9 402 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 PIANPQ8IYJ0 282 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 TBATAQ96M53 351 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 KRT12Q99456 494 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 RTKNQ9BST9 563 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 PHPT1Q9NRX4 125 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SLC23A2Q9UGH3 650 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SLC17A4Q9Y2C5 497 aa13.37□□□□□ -0.27
LINC00540-202ENST00000616974 SNRNP200O75643 2136 aaKnown RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 GLYATL1P3A0A0U1RQE8 302 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 STX7O15400 261 aaKnown RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SLC25A14O95258 325 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 PRAMEF1O95521 474 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 ASMTLO95671 621 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 LPOP22079 712 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 NFKBIAP25963 317 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 HTR1BP28222 390 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 ACTN2P35609 894 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms