RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PYCR3Q53H96 274 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 ZNF569Q5MCW4 686 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 HES3Q5TGS1 186 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 DRICH1Q6PGQ1 229 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-213ENST00000598355 REXO1L1PQ8IX06 675 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 DCBLD1Q8N8Z6 715 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 IFI44Q8TCB0 444 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 SCG3Q8WXD2 468 aaKnown RBP16.01■□□□□ 0.15
TRIM28-213ENST00000598355 GLMNQ92990 594 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 VPS35Q96QK1 796 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 OR2M4Q96R27 311 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 ZKSCAN5Q9Y2L8 839 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 PCYT1BQ9Y5K3 369 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-213ENST00000598355 PIKFYVEQ9Y2I7 2098 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 C1QTNF9BB2RNN3 333 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 INPP4BO15327 924 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 OPA1O60313 960 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 PPFIA2O75334 1257 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 METTL18O95568 372 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 PTMAP06454 111 aaKnown RBP16■□□□□ 0.15
TRIM28-213ENST00000598355 C1QTNF9P0C862 333 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 STIP1P31948 543 aaKnown RBP16■□□□□ 0.15
TRIM28-213ENST00000598355 ADCY8P40145 1251 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 TNNT3P45378 269 aaPredicted RBP16■□□□□ 0.15
TRIM28-213ENST00000598355 GNPDA1P46926 289 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 RPIAP49247 311 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 PRPSAP1Q14558 356 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 CCDC157Q569K6 752 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 PERM1Q5SV97 790 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 ZDHHC20Q5W0Z9 365 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 ARHGEF18Q6ZSZ5 1173 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 GLT6D1Q7Z4J2 308 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 SLC25A41Q8N5S1 370 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 GLYATL1Q969I3 302 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 GSDMCQ9BYG8 508 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 RMI1Q9H9A7 625 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 FEZ2Q9UHY8 353 aaPredicted RBP16■□□□□ 0.15
TRIM28-213ENST00000598355 TMPRSS11EQ9UL52 423 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 GPR34Q9UPC5 381 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 DOLKQ9UPQ8 538 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 TMEM98Q9Y2Y6 226 aa16■□□□□ 0.15
TRIM28-213ENST00000598355 CACNA1BQ00975 2339 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 TMEM8BA6NDV4 472 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 GPR89AB7ZAQ6 455 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 SLC4A1P02730 911 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 PROS1P07225 676 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 GPR89BP0CG08 455 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 CLDN6P56747 220 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 CTBSQ01459 385 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 ILF3Q12906 894 aaKnown RBP eCLIP15.99■□□□□ 0.15
TRIM28-213ENST00000598355 LRP8Q14114 963 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 HLTFQ14527 1009 aaKnown RBP eCLIP15.99■□□□□ 0.15
TRIM28-213ENST00000598355 TCEA2Q15560 299 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 ALS2CLQ60I27 953 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 DOK6Q6PKX4 331 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 EFL1Q7Z2Z2 1120 aaKnown RBP15.99■□□□□ 0.15
TRIM28-213ENST00000598355 TAF8Q7Z7C8 310 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 PHYKPLQ8IUZ5 450 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 KDF1Q8NAX2 398 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-213ENST00000598355 BLOC1S5Q8TDH9 187 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 TBL1YQ9BQ87 522 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 SPATA16Q9BXB7 569 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 IL26Q9NPH9 171 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 SMOXQ9NWM0 555 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.99■□□□□ 0.15
TRIM28-213ENST00000598355 DKK4Q9UBT3 224 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 MOSPD1Q9UJG1 213 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 PADI4Q9UM07 663 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 ZZEF1O43149 2961 aa15.99■□□□□ 0.15
TRIM28-213ENST00000598355 ANKRD11Q6UB99 2663 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 FAM149AA5PLN7 773 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 PRR19A6NJB7 356 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 NTN3O00634 580 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 CHUKO15111 745 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 NUAK1O60285 661 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 AP2A1O95782 977 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 ATP1A1P05023 1023 aaKnown RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 AK4P27144 223 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 SPAM1P38567 509 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 NR1D2Q14995 579 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 TAF1AQ15573 450 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 CCNG2Q16589 344 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 ATP13A5Q4VNC0 1218 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 C14orf28Q4W4Y0 310 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 CERCAMQ5T4B2 595 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 ZNF438Q7Z4V0 828 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 GALNT13Q8IUC8 556 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 SFTPA2Q8IWL1 248 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 OR6C4Q8NGE1 309 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 C1orf54Q8WWF1 131 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 APOL2Q9BQE5 337 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 LRRC40Q9H9A6 602 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 TRIM39Q9HCM9 518 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 SPATS2LQ9NUQ6 558 aaKnown RBP15.98■□□□□ 0.15
TRIM28-213ENST00000598355 TAAR2Q9P1P5 351 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 SIRPGQ9P1W8 387 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 ATXN10Q9UBB4 475 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 RABGEF1Q9UJ41 708 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 JRKLQ9Y4A0 524 aa15.98■□□□□ 0.15
TRIM28-213ENST00000598355 USP12O75317 370 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms