RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 DNAJC6O75061 913 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 ECEL1O95672 775 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 SLC4A1P02730 911 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 PYGMP11217 842 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 RBL1P28749 1068 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 PTPN7P35236 360 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 EIF2S3P41091 472 aaKnown RBP18.24■□□□□ 0.51
CLN3-237ENST00000569030 ATP5OP48047 213 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 MAZP56270 477 aaKnown RBP18.24■□□□□ 0.51
CLN3-237ENST00000569030 OTUD4Q01804 1114 aaKnown RBP18.24■□□□□ 0.51
CLN3-237ENST00000569030 XRCC4Q13426 336 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 TBC1D25Q3MII6 688 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 B3GNT8Q7Z7M8 397 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 CCNJLQ8IV13 435 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 ACTL9Q8TC94 416 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 FGF11Q92914 225 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 MRGPRX2Q96LB1 330 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 OR2M4Q96R27 311 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 FCRL5Q96RD9 977 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 FAM118BQ9BPY3 351 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 GPR63Q9BZJ6 419 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 ZNHIT2Q9UHR6 403 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 LHX6Q9UPM6 363 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 EFR3BQ9Y2G0 817 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 PRKAB1Q9Y478 270 aa18.24■□□□□ 0.51
CLN3-237ENST00000569030 MACROD2A1Z1Q3 448 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 NUDT21O43809 227 aaKnown RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 PNLIPP16233 465 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ITPKBP27987 946 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ACTN2P35609 894 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ACTR1BP42025 376 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 CHRNA4P43681 627 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 RWDD2BP57060 319 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ACTR1AP61163 376 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 C3orf38Q5JPI3 329 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 SIRPB2Q5JXA9 342 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ZNF648Q5T619 568 aaPredicted RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 CCDC181Q5TID7 509 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ALS2CLQ60I27 953 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 CCDC70Q6NSX1 233 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 SPRED1Q7Z699 444 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 GALNT13Q8IUC8 556 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 NAGSQ8N159 534 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 SNIP1Q8TAD8 396 aaKnown RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 GRAMD1AQ96CP6 724 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 PRR11Q96HE9 360 aaPredicted RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 GFM1Q96RP9 751 aaKnown RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 VAT1Q99536 393 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 SPATA16Q9BXB7 569 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 FOXP3Q9BZS1 431 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 CDH19Q9H159 772 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ARFGAP3Q9NP61 516 aa18.23■□□□□ 0.51
CLN3-237ENST00000569030 ATXN7L1Q9ULK2 861 aaPredicted RBP18.23■□□□□ 0.51
CLN3-237ENST00000569030 D6RAR5 112 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 B4GAT1O43505 415 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 DXOO77932 396 aaKnown RBP18.22■□□□□ 0.51
CLN3-237ENST00000569030 EPOP01588 193 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 BPIP17213 487 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 DCDC1P59894 354 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 B4GALNT1Q00973 533 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 ARL14Q8N4G2 192 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 SLC25A41Q8N5S1 370 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 CRELD1Q96HD1 420 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 GORASP1Q9BQQ3 440 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 BPIFA1Q9NP55 256 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 ASCL3Q9NQ33 180 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 VPS18Q9P253 973 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 TRHDEQ9UKU6 1024 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 AMFRQ9UKV5 643 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 PACSIN2Q9UNF0 486 aaPredicted RBP18.22■□□□□ 0.51
CLN3-237ENST00000569030 LOC400499M0QZD8 3231 aa18.22■□□□□ 0.51
CLN3-237ENST00000569030 MGAQ8IWI9 3026 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 EML2O95834 649 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 OR1D5P58170 312 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 EIF3EP60228 445 aaKnown RBP18.21■□□□□ 0.51
CLN3-237ENST00000569030 KIF5AQ12840 1032 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 CHST15Q7LFX5 561 aaPredicted RBP18.21■□□□□ 0.51
CLN3-237ENST00000569030 TMPRSS9Q7Z410 1059 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 PEX26Q7Z412 305 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 ZNF438Q7Z4V0 828 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 LSMEM2Q8N112 164 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 IPMKQ8NFU5 416 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 ZNF578Q96N58 590 aaPredicted RBP18.21■□□□□ 0.51
CLN3-237ENST00000569030 SLC46A1Q96NT5 459 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 ATXN10Q9UBB4 475 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 NFKBIL1Q9UBC1 381 aaPredicted RBP18.21■□□□□ 0.51
CLN3-237ENST00000569030 RSPH14Q9UHP6 348 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 TMPRSS11EQ9UL52 423 aa18.21■□□□□ 0.51
CLN3-237ENST00000569030 CACNA1GO43497 2377 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 TRBV23OR9-2A0A075B6M9 112 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 PPM1DO15297 605 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 DDX3YO15523 660 aaKnown RBP18.2■□□□□ 0.5
CLN3-237ENST00000569030 SLC25A14O95258 325 aaPredicted RBP18.2■□□□□ 0.5
CLN3-237ENST00000569030 FTCDO95954 541 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 AGTP01019 485 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 RBP3P10745 1247 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 ZNF8P17098 575 aaPredicted RBP18.2■□□□□ 0.5
CLN3-237ENST00000569030 MPP3Q13368 585 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 SLC1A5Q15758 541 aa18.2■□□□□ 0.5
CLN3-237ENST00000569030 FOXR1Q6PIV2 292 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms