RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	SRP54	P61011	504 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CAMK2B	Q13554	666 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ZNF285	Q96NJ3	590 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MSTO1	Q9BUK6	570 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FBXO8	Q9NRD0	319 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	RPL36	Q9Y3U8	105 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	C2orf71	A6NGG8	1288 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	BOLA2-SMG1P6	H3BVE0	249 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	VNN2	O95498	520 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CCNYL3	P0C7X3	344 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ZNF26	P17031	533 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TCEA1	P23193	301 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC6A4	P31645	630 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ATP4B	P51164	291 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SH3BP5L	Q7L8J4	393 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	NDNF	Q8TB73	568 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	OR56A5	P0C7T3	313 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FXN	Q16595	210 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MEIOB	Q8N635	442 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ULK4	Q96C45	1275 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MAN1C1	Q9NR34	630 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TRUB2	O95900	331 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	EPHA3	P29320	983 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	RENBP	P51606	427 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PDIA6	Q15084	440 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FGD3	Q5JSP0	725 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ASB13	Q8WXK3	278 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PPP1R36	Q96LQ0	422 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FTHL17	Q9BXU8	183 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC22A5	O76082	557 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	DEFA5	Q01523	94 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	USP41	Q3LFD5	358 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	UBE2U	Q5VVX9	321 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TYW3	Q6IPR3	259 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	UBR7	Q8N806	425 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PPHLN1	Q8NEY8	458 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC35B2	Q8TB61	432 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	NR4A3	Q92570	626 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MUS81	Q96NY9	551 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	KNL1	Q8NG31	2342 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC9A3R1	O14745	358 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PPEF1	O14829	653 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	INTS6L	Q5JSJ4	861 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	COLEC12	Q5KU26	742 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CATSPER4	Q7RTX7	472 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	OR13J1	Q8NGT2	312 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SIPA1	Q96FS4	1042 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SAMD11	Q96NU1	681 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	BLOC1S4	Q9NUP1	217 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TMEM5	Q9Y2B1	443 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	KNTC1	P50748	2209 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PGK1	P00558	417 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	GPX6	P59796	221 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	DGCR6	Q14129	220 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PIGG	Q5H8A4	983 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	NHSL2	Q5HYW2	709 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ZNF517	Q6ZMY9	492 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SPOCK2	Q92563	424 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	LRRC58	Q96CX6	371 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	COMMD9	Q9P000	198 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CEP290	O15078	2479 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SPAG17	Q6Q759	2223 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FAM170A	A1A519	330 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CPNE3	O75131	537 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TUB	P50607	506 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.24	□□□□□ -1.73	4e-10	■■■□□ 18.7
MACF1-231	ENST00000564288	RAP1GAP2	Q684P5	730 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	HOXD1	Q9GZZ0	328 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	GATC	O43716	136 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MAP3K6	O95382	1288 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FGF4	P08620	206 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	GMPS	P49915	693 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ATP12A	P54707	1039 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ZDHHC20	Q5W0Z9	365 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SPO11	Q9Y5K1	396 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	AGAP5	A6NIR3	686 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	VAPB	O95292	243 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	NR2F6	P10588	404 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC7A2	P52569	658 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	KSR1	Q8IVT5	923 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	RNF148	Q8N7C7	305 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	TMIGD2	Q96BF3	282 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ZNF112	Q9UJU3	913 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	FEM1B	Q9UK73	627 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288		A0A1B0GVM2	712 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	AP3D1	O14617	1153 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CYP19A1	P11511	503 aa	Predicted RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC16A2	P36021	539 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CA9	Q16790	459 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ESX1	Q8N693	406 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	PAPD5	Q8NDF8	572 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	ATP13A2	Q9NQ11	1180 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	OXSM	Q9NWU1	459 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MYH11	P35749	1972 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SHOX	O15266	292 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	SLC16A4	O15374	487 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	MED24	O75448	989 aa		4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	CFL1	P23528	166 aa	Known RBP	4.24	□□□□□ -1.73
MACF1-231	ENST00000564288	RAB39A	Q14964	217 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms