RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NDNFQ8TB73 568 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 MAGEE2Q8TD90 523 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 SIGLEC10Q96LC7 697 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 EBNA1BP2Q99848 306 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 ILKAPQ9H0C8 392 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 ITM2CQ9NQX7 267 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 PLSCR3Q9NRY6 295 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 KCNN3Q9UGI6 736 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 DSEQ9UL01 958 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 CLDN5O00501 218 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 GRID2O43424 1007 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 KRT6AP02538 564 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 KRT6BP04259 564 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 TYK2P29597 1187 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 ARCN1P48444 511 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 SUZ12Q15022 739 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 GEN1Q17RS7 908 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 AASDHQ4L235 1098 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 AGMOQ6ZNB7 445 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 LIMS2Q7Z4I7 341 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 LINC00523Q86TU6 105 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 SLC51BQ86UW2 128 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 LYSMD2Q8IV50 215 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 CMTR2Q8IYT2 770 aaKnown RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 PQLC3Q8N755 202 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 OR2T34Q8NGX1 318 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 PCDH19Q8TAB3 1148 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 TNIP3Q96KP6 325 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 TBCBQ99426 244 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 ZNF717Q9BY31 904 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 AGPAT4Q9NRZ5 378 aa13.25□□□□□ -0.29
CLK3-206ENST00000562078 SMPD3Q9NY59 655 aaPredicted RBP13.25□□□□□ -0.29
CLK3-206ENST00000562078 G3V2L1 256 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 APOL1O14791 398 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 MDM4O15151 490 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 SLC22A2O15244 555 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 KCNN4O15554 427 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 RASAL1O95294 804 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CHRNA1P02708 482 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 GSNP06396 782 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ARSAP15289 507 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 POLD2P49005 469 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ALDH7A1P49419 539 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 AFF1P51825 1210 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 BCAR1P56945 870 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CRADDP78560 199 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ILF2Q12905 390 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 SLC12A1Q13621 1099 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CDK10Q15131 360 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ATAD3CQ5T2N8 411 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 WSCD1Q658N2 575 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ZNF534Q76KX8 674 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CCDC103Q8IW40 242 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CCDC28AQ8IWP9 274 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 OR6Q1Q8NGQ2 317 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 NDRG1Q92597 394 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 LPPQ93052 612 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 MUS81Q96NY9 551 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 C9orf16Q9BUW7 83 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 GATA5Q9BWX5 397 aaPredicted RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 DHX35Q9H5Z1 703 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 CD300AQ9UGN4 299 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ST3GAL5Q9UNP4 418 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CDYLQ9Y232 598 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 PCDHA11Q9Y5I1 949 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 SHROOM3Q8TF72 1996 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ZBBXA8MT70 800 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 hCG_2039718K7EN88 272 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 RNF103O00237 685 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 MEN1O00255 615 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ABCB7O75027 752 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 USP12O75317 370 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 TSPAN9O75954 239 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 TFEBP19484 476 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 WARSP23381 471 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 CNTFP26441 200 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 LRPAP1P30533 357 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 RPL14P50914 215 aaKnown RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 GPLD1P80108 840 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 MPP1Q00013 466 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 C19orf57Q0VDD7 668 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ADIGQ0VDE8 80 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 PPP1R3AQ16821 1122 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CYP20A1Q6UW02 462 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 USP51Q70EK9 711 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 DDIASQ8IXT1 998 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 SPARTQ8N0X7 666 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 TOP6BLQ8N6T0 577 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ATXN7L3BQ96GX2 97 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 DEPDC7Q96QD5 511 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 C11orf84Q9BUA3 381 aaPredicted RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 C2orf49Q9BVC5 232 aaPredicted RBP13.24□□□□□ -0.29
CLK3-206ENST00000562078 MAGEB5Q9BZ81 275 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 ADNPQ9H2P0 1102 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 LRRC40Q9H9A6 602 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 SPAG4Q9NPE6 437 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 FBXO8Q9NRD0 319 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 FAM105AQ9NUU6 356 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 WBP1LQ9NX94 342 aa13.24□□□□□ -0.29
CLK3-206ENST00000562078 CACNA2D2Q9NY47 1150 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms